Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00880 ATGCTAGGCACGAGTGTAACCGCAGTGATGATTGCAGTGCAGTTCCTGTATGTGGGTTTGAACACTCTGATCAAAGCATCCTTATCCAAAGGAATGAGCAATTTTGTTTTTGTTGCATATTCAAACCTCCTTGCATTCTGTTTCCTGTTACCATCAACCTTAATCTATCACAGAAATAGAGCTCCTCCACCAATCAATATGTGGATTATCTTCAGAATTTTTGTTATGGGCTTGATCAGCATTTCAATACAGACACTTATGTATACTGGACTTGGCTTTAGCTCTCCCACTCTGGCCTCGACCATGGAGGACCTCGTTCCAGCTTTTACTTTCATCATTGCCATTATTTCCAGGATGGAAAAGCTGGATCTAAAATTACCAAGTTGCCTGGCAAAATCCACCGGCACTGTGGTCTCCATTGGAGGAGCATTGACCGTGACCTTATACAAAGGGTTGCCTGTGACTATGCCAAAAAATGTGCTGGATGTTACTTTCCTCTCATCACAGCAATCAGAATGGTTACTAGGAGGCATTCTCCTTGCAGCTGGTAGCTTTTTCATTTCAATCATGCTTATCATCCAGACCTGGACTATCAAAGACTATCCTGCGGAGCTAATGTTAACAACCATTTGTTGCAGTTTCGTTGTTATCCTATCTTTCATAGTAGCTTTCATTGCAGAGGAAAATCCCAAGGCATGGATACTTAAACCTGATATGGAGTTGCTAGCTATATTCTTTCAGGCAACTTTTTTGATATCTTTGAGAAGTGTGGTGCATGCATGGGCGTGTCACAAGAAGGGGCCAGTATATGTTGCTATGTTCAATCCTTTGGGCATTGTCTTTGCACTTTCCATGGGGGTTATGCTTCTAGGAGATGCTCTATATCTCGGAAGTATTATAGGAGCTGTTATAATAGCTATTGGGTTTTATGCTGTGATATGGGGCCAGAATCAAGAGGAGAAGATGGTGGTACATGAAAAATACGAAACCTGTGGCATCATCTCATCGTCTTCTTCTGCAGCCCCTCTGCTTCAGAACAAAAATAAGGACACAAGTACTTCTGTATGA 1068 0.4204 MLGTSVTAVMIAVQFLYVGLNTLIKASLSKGMSNFVFVAYSNLLAFCFLLPSTLIYHRNRAPPPINMWIIFRIFVMGLISISIQTLMYTGLGFSSPTLASTMEDLVPAFTFIIAIISRMEKLDLKLPSCLAKSTGTVVSIGGALTVTLYKGLPVTMPKNVLDVTFLSSQQSEWLLGGILLAAGSFFISIMLIIQTWTIKDYPAELMLTTICCSFVVILSFIVAFIAEENPKAWILKPDMELLAIFFQATFLISLRSVVHAWACHKKGPVYVAMFNPLGIVFALSMGVMLLGDALYLGSIIGAVIIAIGFYAVIWGQNQEEKMVVHEKYETCGIISSSSSAAPLLQNKNKDTSTSV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00880 355 Pfam EamA-like transporter family 11 126 IPR000620 GO:0016020
Rops1g00880 355 Pfam EamA-like transporter family 175 313 IPR000620 GO:0016020
Rops1g00880 355 PANTHER WAT1-RELATED PROTEIN 7 327 IPR030184 GO:0016020|GO:0022857
Rops1g00880 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00880 Rops-Chr1 21289711 21292760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00880 8 322 Nodulin-like Gene Family AT5G40240 41.796 1.80e-81 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00880 - - gmx:100814600 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00880 1 21289711 21292760 Rops1g00880 1 21289711 21292760 ECH