Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00876 ATGCATTGGCTTCACTCTCAAATCCACCAGAGCAATGGTGCTATCACCAGTCCTCCTATTCTTTCCCCTTCTTCTTCTTCTTCTTCTTCTTCCCCTTCAGTGCCTTATAGTTCTAACTCCCAGAAACAATTCCCAGCTTCTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTTCTTTTAGCTGTTGTATTTTTCATCTTGGGTATCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAGTAGATACCCAGACATGTCTGAATCTGATGCTTACCAGAGACAATTGCAGCAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCAGTTTTCTTTTACAAAGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAATTCCTGGAACAAGACAAGCTGAGATTGCTGCCCAATTGTAATCATGCATTTCATATTGACTGCATAGACACATGGTTGCTGTCCAATTCAACTTGTCCTCTTTGTAGAGGGACTCTTTATTCACCAGGCTTTGCCTTTGAAAACCCAGATTTTGACTTTGAAGGTCCAAGGGAGGAAGAAGGGGTTTCGGGCAGTGGTGGAAGTGGGGTTGCTTCAGTTAACAAACCTACAGAAAATCACATAATGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCTCAAATGATGGAGAAGGGGTTGAAAGGGGTGAAGGAGAGAGCAGTAATGGTAATTTAGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGAGAGTGGCTTTACACCCCAATAGAGGTGATAGCAGTATGAGACAACTGAAGGGAAGAGCAGCACCAAATGGGAGTTCTTTCATTGATGGGGATATTGAGGGCAAAAAAATCAATGTTGCAAGAAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTAACAGGTTCATCAGATACCCATTTCCATAATTCTAATGTCACTGCAACTTTGCCATGGATGAATAAAGCCCGAGGTACATGA 1125 0.4142 MHWLHSQIHQSNGAITSPPILSPSSSSSSSSPSVPYSSNSQKQFPASSSSGNRISPAILFIIVLLAVVFFILGILHLLVRFLIKHRSSSSISQSSRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHIDCIDTWLLSNSTCPLCRGTLYSPGFAFENPDFDFEGPREEEGVSGSGGSGVASVNKPTENHIMNGKRVFSVRLGKFRSSNDGEGVERGEGESSNGNLDVRRCYSMGSFQYVVADSDLRVALHPNRGDSSMRQLKGRAAPNGSSFIDGDIEGKKINVARKGESFSVSKIWQWSRKDKLTGSSDTHFHNSNVTATLPWMNKARGT* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00876 374 FunFam RING-H2 finger protein ATL46 108 193 - -
Rops1g00876 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 48 340 - -
Rops1g00876 374 SUPERFAMILY RING/U-box 125 194 - -
Rops1g00876 374 CDD RING-H2_EL5-like 145 188 - -
Rops1g00876 374 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Rops1g00876 374 MobiDBLite consensus disorder prediction 207 228 - -
Rops1g00876 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 193 IPR013083 -
Rops1g00876 374 MobiDBLite consensus disorder prediction 8 50 - -
Rops1g00876 374 SMART ring_2 146 187 IPR001841 -
Rops1g00876 374 Pfam Ring finger domain 145 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00876 Rops-Chr1 21181736 21183309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00876 73 352 C3H Transcription Factor Family AT2G18650 40.453 2.14e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00876 - - gmx:100805154 549.666