Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00872 ATGGCATCAAGATCGTACGCTAATCTACTGGACTTAGCTGGAGGTTTACTGGATATTCCTTACACCCCCAGGACTATCCCAAAGGTTATGACAGTTCCTGGAGTCATTTCAGACCTGGATGTTTGTGGGAGATATGATGGGGATTCAGATGTTAGCACTTCTGGTTATTGGGAGCGGAAAATCATTGTGGCTAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCCAAATGGTGTTTCAGTTTGGATGAGGATTCAATTTTGTTGCAATTAAAAGATGGATTTTCTTCCGACACTGAGGTTATCTATGTGGGATCCCTCAAGGTTGAAATAGATGCCAGTGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGACTTCAATTGCATACCTACCTTTCTACCCCATGATCTCCAGAAAAAGTTTTATCTTGGCTTTTGCAAGCAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCCATGTGCCCTGATCATGGTGACCGGTTTGACCGTGTGCTTTGGCGGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATCAATCCTGATGATGATTATGTTTGGGTTCATGACTATCATTTGATGGTTTTGCCTACATTCTTGAGGAAGCGGTTTAATCGAGTTAAACTTGGTTTTTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCGGTAAGGGATGAAATTCTGAGGGGATTGTTGAATTCTGATTTAATTGGTTTTCATACATTTGATTATGCTCGGCATTTCCTCTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTTTGCCTGTGGGCATTCACATGGGTAGGCTTGAGTCTGTATTAAATCTTCATTCTACATCTGCTAAATTGAAAGACATTCAGGAAGAGTTTAAGGGTAGGAAGGTGATTCTTGGTATTGATGACATGGATATTTTTAAGGGCATGAGTCTGAAGCTTCTAGCTGTTGAGCAGCTGCTGCAGCAGAATCCAGATTTGCAGGGCAATGTTGTCCTGGTTCAGATTGTGAATCCTGCTAGGGGTTCAGGGAAGGATGTTCTGGAAGCGAAGAAGGAAACATATTTAATTGCCCAGAGGATTAATGATACTTATGGTTCAAACCAATATCGGCCTGTTATTCTCATTGACCGGCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGCAGCAGATTGCTGCATTGTCAATGCTGTGAGGGATGGTATGAACTTAGTCCCATACAAATACATTGTCTGTAGACAAGGAACTGCACAGCTGGATAAAGTTTTGACCAGAGAAAATGATTCTCCTCGTACTAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGGGTCAATCCCTGGGATATAGATGCTGTGGCTGATGCTCTGTATTCTGCCATTACCATGCATGATTCAGAGAAGCAATTAAGGCATGAAAAACACTACCGATATGTCAGTTCTCATGACGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATGGGTTTGGGCCTAGGGTTTAGAGTTGTTTCTCTTTCACCTGGTTTTAGGAAATTGTCGATTGACCACATTGTTTCAGCATACAAAAGAACCAGTAGAAGAGCCATATTTCTTGATTATGATGGTACTGTTGTACCACAATCTTCTATAAATAAAATCCCCAGCCCTGAAGTAATATCTGTGCTAAATGATCTGTGTAACGATGCTAAAAATACTGTGTTCATTGTGAGTGGGAGGGGAAGAGATTCTTTAAGTAATTGGTTTACTTCATGCAAAATGATGGGACTTGCAGCTGAACATGGATACTTTTTAAGGTGGAGTAAAGATTCTGAATGGGAAACTAATCACTTGTCTGCTGATCTTGATTGGAAGAAGATTGTGGAACCTGTCATGCAGTTGTATACGGAGGCAACTGATGGATCTAATATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATTATCAAGATGCAGACCCCGATTTTGGCTCTTGCCAAGCGAAAGAATTGTTGAATCACCTGGAAAGCGTGCTTGCTAATGAACCTGCAGTTGTTAAGAGGGGCCAGCATATTGTTGAAGTCAAGCCACAGGGAATAAGCAAGGGCTTGGTAGCTGAAAAGATTCTTTCCACTATGTTTAATGGTGGTAATACACCAGATTTTGTGATGTGCATTGGAGATGATACTTCTGATGAAGACATGTTTGAGAGCATATTAAGGACACTCTCATGCCCATCAATGCCAGTAGCTCCTGAGATCTTTGCCTGCACTGTTGGTAAAAAACCTAGCAGGGCCAAGTATTATCTCGATGACCCTGCTGATGTCATGAAGTTGCTTCAAGGCCTTGGTACTTCATCAAATCCAAAGCCCAGGCATCTAGCCCAATTCCAAGTTTCTTTTGAGAGCACAATTTGA 2583 0.4166 MASRSYANLLDLAGGLLDIPYTPRTIPKVMTVPGVISDLDVCGRYDGDSDVSTSGYWERKIIVANMLPLQAKRDIETAKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIDASEQEEVAQKLLEDFNCIPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRVLWRAYVSANKIFADKVMEIINPDDDYVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLHSTSAKLKDIQEEFKGRKVILGIDDMDIFKGMSLKLLAVEQLLQQNPDLQGNVVLVQIVNPARGSGKDVLEAKKETYLIAQRINDTYGSNQYRPVILIDRPVPRFEKSAYYAAADCCIVNAVRDGMNLVPYKYIVCRQGTAQLDKVLTRENDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALYSAITMHDSEKQLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSIDHIVSAYKRTSRRAIFLDYDGTVVPQSSINKIPSPEVISVLNDLCNDAKNTVFIVSGRGRDSLSNWFTSCKMMGLAAEHGYFLRWSKDSEWETNHLSADLDWKKIVEPVMQLYTEATDGSNIEIKESALVWHYQDADPDFGSCQAKELLNHLESVLANEPAVVKRGQHIVEVKPQGISKGLVAEKILSTMFNGGNTPDFVMCIGDDTSDEDMFESILRTLSCPSMPVAPEIFACTVGKKPSRAKYYLDDPADVMKLLQGLGTSSNPKPRHLAQFQVSFESTI* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00872 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Rops1g00872 860 Gene3D Glycogen Phosphorylase B; 313 528 - -
Rops1g00872 860 CDD HAD_TPP 592 833 - -
Rops1g00872 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Rops1g00872 860 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
Rops1g00872 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
Rops1g00872 860 Gene3D - 720 850 IPR023214 -
Rops1g00872 860 Gene3D - 590 708 IPR023214 -
Rops1g00872 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Rops1g00872 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Rops1g00872 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Rops1g00872 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Rops1g00872 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Rops1g00872 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Rops1g00872 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Rops1g00872 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 839 IPR001830 GO:0003824|GO:0005992
Rops1g00872 860 Gene3D Glycogen Phosphorylase B; 55 312 - -
Rops1g00872 860 NCBIfam trehalose-phosphatase 589 837 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00872 Rops-Chr1 21116855 21122248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00872 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.055 0.0 1347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00872 K16055 - gmx:100818536 1605.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00872 1 21116855 21122248 Rops1g00872 1 21116855 21122248 ECH
Rops1g00872 1 21116855 21122248 Rops2g02737 2 46329729 46335030 PCT