Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00871 ATGGATCTGGAAGGTGGAACTCGTGGAAACTCTGCTAAGAAGGAATCGTGGAAAACGGTTCTGACTTTAGCATATCAGAGCCTTGGAGTTGTGTATGGTGATTTGAGCATTTCACCTTTGTATGTGTTTAGATGCACTTTTGCTGAGGATATTGTACACACAGAGACCAACGAGGAAATCTATGGTGTCTTGTCTTTGGTGTTTTGGACTGTGACTTTGGTTCCTTTGGTTAAATATGTGTTCATAGTGCTAAAAGCTGATGATAATGGTGAAGGAGGAACTTTTGCTTTGTACTCATTGTTGTGTCGCCATGCCAGAGTTAACTCTCTCCCTAATGGCCAAGTGGCTGATGAGGAACTCTCTGAATACAAAAAAGATGTTTATAGTGTTGTCCCAGATAGAGGCTTTGCTTCAAGGCTTAAGTCCACTCTTGAGAAGCACAAGGTTCTTCAGAAGATTTTGTTGGTTCTGGCTTTGATTGGAACTTGCATGGTGATTGGTGATGGAGTTGTCACACCGGCTCTTTCTGTTTGTTCAGCTGTGTCAGGATTCGAGCTTTCAATGTCCAAGGAGCATCACGCATATGTAGAAGTTCCAGCTGCATGCATCATATTAATACTCTTGTTTGCACTTCAACATTATGGCACGCACAGGGTTGGCTTCTTGTTTGCTCCTATAGTTTTGACATGGCTTTTCTGCATCAGTGCCATTGGAATATATAATATATATTACTGGAATCCTCATATATACCAAGCACTTTCTCCATATTATGTTTTCCAATTTTTAAGGAAAACTCAGAGAGAAGGTTGGATGGCCCTTGGTGGTGTTTTGCTGTCCATAACAGGATCAGAAGCCATGTTTGCTGATCTCGGGCACTTTTCACAATTATCAATCAAGATTGCTTTCACTTCTGTGGTTTATCCAGCTTTAATTCTTGCATATATGGGGCAAGCTGCTTATCTATCAAGACATCATGACGTTGAGCATCTGTATCACTTCGGGTTTTACGTATCTGTACCAGAGAAATTGAGATTGCCTGTTCTGGTGATAGCCATTCTTGCTGCAGTTGTGGGAAGCCAAGCCATCATCACTGGAACGTTCTCAATTATCAAGCAATGCTCTGCATTGAGTTGCTTCCCTAGAGTTAAAGTGATTCACACGTCATCCAAAATTCATGGGCAAATATATATCCCCGAGATCAATTGGCTATTGATGTTTTTGTGTTTGGCTGTAACTATCGGTTTCAGAGACACAAAGCGTCTGGGTAATGCCTCAGGTTTGGCAGTTATCACAGTGATGCTGGTCACTACATCTTTGATGTCACTGGTTATCGTACTATGCTGGCACCAGAATGTTCTCCTTGCACTTGGGTTTGTTTTCATATTTGGCACCATTGAGGCTTGCTTCTTCTCTGCTTCTCTTATCAAATTCCTACAAGGAGCATGGGTGTCCATTGTATTGGCCCTTGTATTTGTGACTGTCATGTATATTTGGCACTATGGCACACTCAAAAAGTATGAATTTGATGTTCAAAACAAGGTCTCTATCAACTGGCTACTTGGCTTAGGTCCCAGCATCGGTATTGTACGAGTGCGTGGGGTTGGCCTTATACATACTGACCTAGTGTCTGGAATTCCAGTAATCTTCTCCCACTTTGTGACCAACCTGCCAGCCTTCCATCAAGTCCTAGTTTTCCTCTGCATCAAACACGTGCCAGTTCCACATGTTAGACCTGAGGAGCGGTTTCTAGTTGGTCGTGTGGGTCCAAGAGATTTCAGACTCTACCGGTGCATAGTTCGATATGGATATCGTGATGTCCACAAAGATGATATTCAGTTTGAGAATGATCTTTTATGCAGCATAGTAGAGTTCATACATGCAGGAAGCACTGGATTAAACTCTTCAAATGATGAGCTTGAAAAGGACGACAAAATGACAGTTGTTGGGACATGTTCTACTCATTCCATTTTGATGAGTGAGGATAATGTGGATAATATTGATAATATAGACCCTGCTGGGACTTCAGAACTTAAGGAGATAAAGTCACCCCAGGTGATCAAACCAAAGAAAAGGGTAAGGTTTTTGGTACCAGAGAGTCCAAAGGTTGATACAGAAGCAAAGGAAGAGTTGGAGGAGGTGATGGAAGCTAGGGAAGCTGGGGTAGCTTACATTATAGGACAGTCATACATGAGAGCCAAACCAGGTTCTAGCACACTCAAGAAATTAGTCATTAATTTTGTGTATGAATTCCTAAGCAGGAATAGTAGGGCACCCTCTTTTGTACTTGGCATACCTCATGCGTCATCTCTTGAAGTTGGGATGATGTACCAAGTTTAA 2337 0.4202 MDLEGGTRGNSAKKESWKTVLTLAYQSLGVVYGDLSISPLYVFRCTFAEDIVHTETNEEIYGVLSLVFWTVTLVPLVKYVFIVLKADDNGEGGTFALYSLLCRHARVNSLPNGQVADEELSEYKKDVYSVVPDRGFASRLKSTLEKHKVLQKILLVLALIGTCMVIGDGVVTPALSVCSAVSGFELSMSKEHHAYVEVPAACIILILLFALQHYGTHRVGFLFAPIVLTWLFCISAIGIYNIYYWNPHIYQALSPYYVFQFLRKTQREGWMALGGVLLSITGSEAMFADLGHFSQLSIKIAFTSVVYPALILAYMGQAAYLSRHHDVEHLYHFGFYVSVPEKLRLPVLVIAILAAVVGSQAIITGTFSIIKQCSALSCFPRVKVIHTSSKIHGQIYIPEINWLLMFLCLAVTIGFRDTKRLGNASGLAVITVMLVTTSLMSLVIVLCWHQNVLLALGFVFIFGTIEACFFSASLIKFLQGAWVSIVLALVFVTVMYIWHYGTLKKYEFDVQNKVSINWLLGLGPSIGIVRVRGVGLIHTDLVSGIPVIFSHFVTNLPAFHQVLVFLCIKHVPVPHVRPEERFLVGRVGPRDFRLYRCIVRYGYRDVHKDDIQFENDLLCSIVEFIHAGSTGLNSSNDELEKDDKMTVVGTCSTHSILMSEDNVDNIDNIDPAGTSELKEIKSPQVIKPKKRVRFLVPESPKVDTEAKEELEEVMEAREAGVAYIIGQSYMRAKPGSSTLKKLVINFVYEFLSRNSRAPSFVLGIPHASSLEVGMMYQV* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00871 778 NCBIfam potassium uptake protein 23 778 IPR003855 GO:0015079|GO:0016020|GO:0071805
Rops1g00871 778 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 777 IPR003855 GO:0015079|GO:0016020|GO:0071805
Rops1g00871 778 Pfam K+ potassium transporter 25 605 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00871 Rops-Chr1 21099911 21105062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00871 1 778 Inorganic Solute Cotransporters AT1G70300 73.691 0.0 1180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00871 K03549 - gmx:100793141 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00871 1 21099911 21105062 Rops1g00871 1 21099911 21105062 ECH
Rops1g00871 1 21099911 21105062 Rops2g02733 2 46297172 46301933 PCT
Rops2g02732 2 46217595 46242244 Rops1g00871 1 21099911 21105062 PCT