Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00868 ATGATCCAAAACACAAACGGGTCGGATCGTCGGATACTGACATTCCCGGCGGTTCATCCCTGCGAGGACATTGCTCCTTCTACACTTCTCGCTTCCCTCATAACCCTCTCTAACAACATTTCCAATTTCCAAAACAAGTTCTTCCCATGCAACAAGAAAAACGCGAGAAACGCCATTCGTTTGACCCAGCTTCTCCAACCTTTCCTCCATGAGATCCGAGACCATCATTCGGGTCTTCCTGACCCTGCTACCCTTAGCTTGTCGGAGCTCCACCTGACCTTCCAGAAGCTTCTTTTTTTGTTGGAAGATTCTGCTCGTGAAGGTGCAAGGTTACGGATTTTAATGGAGTCGGATCGGGTCGCAACTCAGTTTCGGGTCCTATCCAGATCCATGGCCACTGCTCTGGAAGTTTTCCCTTTCGTTTCTGTTGAGGTTTCGGAGGAAGCTAGAGAGCAGGTTGTGCTGTTGATGAAGCAAGCAGAGGAAGCAAGGTTTGACGTTGAGCCCGATGATAAACGGGCTATTATGGGTGTAATGTCGGTTTTGAGCCAGTTTGAGAACCGGGTTGACCCGAATGAGGGTGACCTGAAGTGGGTGCTTGATTATATTGGGGTTTGCGGGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGATGGTGAAATTGGGTTTGAGTGCTTGAACGAGGAAAAGAGAAAGGTGGGTCTTTTGAGTAGTTTGATGGGGTTCATGAGCTATTGCAGATGCGTGGTGATGGAAGTTGTAGATGGTAAAGAAGGTAATAAGAAATCTAGAGAAAGGAGCATTGAAAGTGAGATGATTCTGAGTTGCATCAACACAGATGATTTTCGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCAGTGACAATAGAGACAGGTCACACTTATGATCGTTCTTCAATTCTCAAATGGTTCAGAAGTGGGAATGCAATATGTCCCAAGACGGGTAAAAGGCTTAGCAGCATTGAATTGGTACCCAACTTAGTGCTTCGGAGGTTGATTCGACAATATTGCTCTGCCAATGGCATTCCTTTTGCTGATTTGGGTCGTAGGAACCGTGACATCACAAGGACGGTGCAGCCAGGAAGCTTGGCCGCAGAGGAAGCCATGAAAATGATGGCTGGTTTTCTTTGTGGAAGACTTGAGAAAGGAACTTGGGAAGAGAAAAACCGAGCTGCATTTGAGATGAGGCTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCGGTCCCTCTTTTGATGAAGTTGTTGTCATCGAGAGATTCATCGGCACAAGAGAATGCAGTTGCAGCCCTTTTGAACATCTCAAAATACCCCAAGAGCAGAGCTGAGATGGTTGAGAATGGGGGATTGGAATTGATTGTAGGGGTCTTAAAGAAGGGGCTAAAGATTGAAGCTCGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTGCTTCGAATGCTGAGTATGGGAACTTGATAGGGGAGGAGCCACAAGCAATTCCATCATTGATCAGGCTCATCAATGATGACTCTGATCGAAGCAAAAAGAATGGCTTGGTTGCAATGTTTTGCCTCCTTAGGCACCCTCAAAATCATAGGAGCGTGCTTGCAGCTGGAGCAATTCCTTTGTTGCTTAACATCTTAAGAGCAAGTGAGAAAGAAGACCTCATCACAGACTCGCTTGCAATTCTAGCAATTCTGGCAGAGAGAAGTGATGGAACATTAGCAATCCTTCATTACGGGGCTTTGCACGTAGCTGTTGAAGTTTTGGGTTCTTCCACTTCAAGGGTGGGGAAGGAGCACTGCGTGTCTTTGTTGCTTTCTTTAGCAATAAATGGAGGAGTAGATGTGGTTGCTCATTTGGTGAAGAGCCCTTCTCTAATGGGATCCTTATATTCCCAAATCAGTGAAGGCACATCTCGAGCAAGCAAGAAGGCCAGTGCTCTCATAAGAGTCCTCCATAATTTTTACGAAAGGAGGTCCTCTGGCTTCAAGACTTCAGTCATTCCACAGGAGCAATTCATTCATGTATGGTAA 2061 0.458 MIQNTNGSDRRILTFPAVHPCEDIAPSTLLASLITLSNNISNFQNKFFPCNKKNARNAIRLTQLLQPFLHEIRDHHSGLPDPATLSLSELHLTFQKLLFLLEDSAREGARLRILMESDRVATQFRVLSRSMATALEVFPFVSVEVSEEAREQVVLLMKQAEEARFDVEPDDKRAIMGVMSVLSQFENRVDPNEGDLKWVLDYIGVCGWSECNKEVKFLDGEIGFECLNEEKRKVGLLSSLMGFMSYCRCVVMEVVDGKEGNKKSRERSIESEMILSCINTDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLSSIELVPNLVLRRLIRQYCSANGIPFADLGRRNRDITRTVQPGSLAAEEAMKMMAGFLCGRLEKGTWEEKNRAAFEMRLLTKTSIFSRSCLVEAGSVPLLMKLLSSRDSSAQENAVAALLNISKYPKSRAEMVENGGLELIVGVLKKGLKIEARQHAAAVLFYLASNAEYGNLIGEEPQAIPSLIRLINDDSDRSKKNGLVAMFCLLRHPQNHRSVLAAGAIPLLLNILRASEKEDLITDSLAILAILAERSDGTLAILHYGALHVAVEVLGSSTSRVGKEHCVSLLLSLAINGGVDVVAHLVKSPSLMGSLYSQISEGTSRASKKASALIRVLHNFYERRSSGFKTSVIPQEQFIHVW* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00868 686 Gene3D - 370 671 IPR011989 -
Rops1g00868 686 PANTHER U BOX DOMAIN-CONTAINING 52 661 - -
Rops1g00868 686 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Rops1g00868 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 590 IPR000225 GO:0005515
Rops1g00868 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 352 IPR013083 -
Rops1g00868 686 Pfam U-box domain 281 349 IPR003613 GO:0004842|GO:0016567
Rops1g00868 686 CDD RING-Ubox_PUB 281 332 IPR045210 -
Rops1g00868 686 Pfam Armadillo/beta-catenin-like repeat 415 450 IPR000225 GO:0005515
Rops1g00868 686 FunFam RING-type E3 ubiquitin transferase 359 672 - -
Rops1g00868 686 SMART arm_5 410 451 IPR000225 GO:0005515
Rops1g00868 686 SMART arm_5 536 577 IPR000225 GO:0005515
Rops1g00868 686 SMART arm_5 452 493 IPR000225 GO:0005515
Rops1g00868 686 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Rops1g00868 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Rops1g00868 686 SUPERFAMILY RING/U-box 281 353 - -
Rops1g00868 686 FunFam RING-type E3 ubiquitin transferase 279 351 - -
Rops1g00868 686 SUPERFAMILY ARM repeat 385 661 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00868 Rops-Chr1 20981326 20983616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00868 1 686 U-box Gene Family AT1G60190 47.202 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00868 - - gmx:100795816 978.778