Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00853 ATGGCTAAAGGAAATTCAACAAATGGGTCATCTTCTTCTGATTCAGAAAAGGCTTCAGCTCCATCACCATTATCATCATCATCACGTTCTTCAGATGACTCAGATTCTCCGCAAAAAGCACCATCCAAGTCTCCGCCGTCACCGTCTCCGCCGTCACCTCCGCCGCCGTCTCATTCTCCACCACCTGCCCCATCTCCGTCGCCACCTCCGCCGACACCGCCCCACTCTCCACCGCCAAAATCTTCGCCGCCTCCACAAAGTTCACCGCCATCAAAAGGTTCAGCTCCTCCCCCAAAACCTCCATCATCGCCACCCCCCACACCACCATCATCGCCGCCACCCTCATCTCCGCCACCAACGTTGCCGTCACCACCACCACCCAACGATAATTCTCCTCCTTCTAACGATGATTCTCCTCCTTCTACCAATAATTCTCCTCCTCCTTCAGAATCTAAATCCCCTCCTCCACCTCCTCTATTTGTAACTCCACCTTCCCCTCCTTCCCATGTTACTCCCCCTCCTCAGCCACCAACTTCAGCGCCAAACCACCCTCTGCCACCGCAGTCACCAGTGCCCATTTCCTCGGGTTCACATTCAAAACCAAGCGGTTCTCCTTCTAAAAGCCACTCCCCGTCCCCGTCTACGTCCGCATCACCACCCTCCGGTAATAACGCGGGACAATATCTTGGCTTTTCTCTTGCCGCGGTTTTCCTTGTTGCCTTTATTGCTGTTATTCTTTTTTTTGTATTGAGGAAGAAGAACAAACATGGAGATGTCTATGCCTTGCCACCCCCTAAGAAATCTCAAATGAAAGGAGATGTGCATTACTATGTAGATGAGCCTGGTTTTGATGGGTTTTATAGTTCACAACATAGGAATGGCGTGCAGCATTTGAGAACTCCTTCAGACCCAGGGCAGCAATGGAATGCTGGTCAAATGTTTTTTAGCTACGACAAGATTGTGGAAATTACTAACGGGTTTTCTAGTGAAAATGTAATAGGGGAGGGTGGATTTGGTTATGTTTACAAGGCTTCAATGCCAGATGGTAGAGTGGGAGCAGTTAAGCTTCTGAAGGCTGGTAGTGGGCAAGGAGAGAGGGAGTTCAGGGCTGAGGTGGATATTATTAGCCGTATCCATCATAGACATTTGGTATCATTGATTGGTTATTGCAGCTCTGAGCAGCAAAGAGTGCTTATCTATGAGTACGTTCCAAATGGGAATCTCAGCCAGCACTTGCATGGAAATGGAATAATTTTGGATTGGCCCAAGAGGGTGAAGATAGCAATTGGAGCTGCAAGGGGCCTGGCATATCTGCATGAAGGCTGCAACCCGAAGATTATTCACAGAGATATTAAGTCGGCAAATATACTTTTGGATAATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCAAGGCTAACCGATGATGCTTATACCCATGTATCAACAAGGGTGATGGGAACTTTCGGGTACATGGCTCCAGAATATGCAACTAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCATTTGGAGTTGTTCTCCTTGAGCTTGTAACTGGAAGGAAACCTGTAGATCCAACTCAGCCTGTGGGAGATGAGAGTTTGGTTGAATGGGCTCGTCAACTTCTCCTTCGTGCAATTGAGACAGGTGACTTTAGTGAACTAGTAGACCCAAGGCTTGAAAGCAACTACGTTGACAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCATGTGTCCGCCATTCTGCTCCAAAACGGCCTAGTATGGTTCAGGTGGCAAGAGCCTTAGACAGTGGAGACCCATATGATCTATCTAATGGGGTGAAATATGGTCAGAGCACTATATATGATTCTGGCCAGTATAATGCAGACATCATGAGATTCAGAAGGATGGTTAATGGCAGCTTTGATGATTCTGAATATGATATGTATAGTTCAGAATACGGTACAAGAGAGATGTCTGGACCCCAACAAGCGTGGATGCCACAAGGTTCAAGTGGTAATTCAGAAAAAGAGTTTTCCAAGGCCAAAGGAGCAGTGCTTAGCACAGGTCTTGAAATAACACAATTACCAGAGCAGTAA 2091 0.4715 MAKGNSTNGSSSSDSEKASAPSPLSSSSRSSDDSDSPQKAPSKSPPSPSPPSPPPPSHSPPPAPSPSPPPPTPPHSPPPKSSPPPQSSPPSKGSAPPPKPPSSPPPTPPSSPPPSSPPPTLPSPPPPNDNSPPSNDDSPPSTNNSPPPSESKSPPPPPLFVTPPSPPSHVTPPPQPPTSAPNHPLPPQSPVPISSGSHSKPSGSPSKSHSPSPSTSASPPSGNNAGQYLGFSLAAVFLVAFIAVILFFVLRKKNKHGDVYALPPPKKSQMKGDVHYYVDEPGFDGFYSSQHRNGVQHLRTPSDPGQQWNAGQMFFSYDKIVEITNGFSSENVIGEGGFGYVYKASMPDGRVGAVKLLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGYCSSEQQRVLIYEYVPNGNLSQHLHGNGIILDWPKRVKIAIGAARGLAYLHEGCNPKIIHRDIKSANILLDNAYEAQVADFGLARLTDDAYTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDPTQPVGDESLVEWARQLLLRAIETGDFSELVDPRLESNYVDSEMFRMIEAAAACVRHSAPKRPSMVQVARALDSGDPYDLSNGVKYGQSTIYDSGQYNADIMRFRRMVNGSFDDSEYDMYSSEYGTREMSGPQQAWMPQGSSGNSEKEFSKAKGAVLSTGLEITQLPEQ* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00853 696 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00853 696 MobiDBLite consensus disorder prediction 1 221 - -
Rops1g00853 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Rops1g00853 696 MobiDBLite consensus disorder prediction 655 679 - -
Rops1g00853 696 FunFam proline-rich receptor-like protein kinase PERK8 403 613 - -
Rops1g00853 696 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00853 696 CDD STKc_IRAK 333 600 - -
Rops1g00853 696 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
Rops1g00853 696 SUPERFAMILY Protein kinase-like (PK-like) 308 599 IPR011009 -
Rops1g00853 696 PRINTS Proline rich extensin signature 66 83 - -
Rops1g00853 696 PRINTS Proline rich extensin signature 49 65 - -
Rops1g00853 696 PRINTS Proline rich extensin signature 25 46 - -
Rops1g00853 696 PRINTS Proline rich extensin signature 84 109 - -
Rops1g00853 696 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 236 646 IPR047117 -
Rops1g00853 696 MobiDBLite consensus disorder prediction 41 191 - -
Rops1g00853 696 MobiDBLite consensus disorder prediction 192 221 - -
Rops1g00853 696 Pfam Protein tyrosine and serine/threonine kinase 330 598 IPR001245 GO:0004672|GO:0006468
Rops1g00853 696 Gene3D Phosphorylase Kinase; domain 1 291 402 - -
Rops1g00853 696 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 304 402 - -
Rops1g00853 696 MobiDBLite consensus disorder prediction 655 675 - -
Rops1g00853 696 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00853 Rops-Chr1 20838313 20843411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00853 114 655 Trihelix Transcription Factor Family AT1G70460 52.736 2.56e-178 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Rops1g00853 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00853 - - gmx:100807815 709.909