Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00848 ATGTCCATAACTGTAATGGAGATACTGATTCAATGCGCCATCAGGAGCAGTTTGGCTGATGTGGCACACAGTTTTGGTGGGTCATTAGATGAAGAGGTGGTTCGAGTGTACACTAAAAAAATTCTTGATGGGTTAAAGCTTCTCCACCATGGAATTGTGCACTGTGACCTTAAGAGCAAGAATGTGCTTTTGGACTCATCTGGGAACATCAAGCTGGCGGATTTTGGAGGGTGGTTTGGCAAATGCTTGGCAATGTGTTAG 261 0.4444 MSITVMEILIQCAIRSSLADVAHSFGGSLDEEVVRVYTKKILDGLKLLHHGIVHCDLKSKNVLLDSSGNIKLADFGGWFGKCLAMC* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00848 86 Pfam Protein kinase domain 9 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00848 86 Gene3D Transferase(Phosphotransferase) domain 1 16 78 - -
Rops1g00848 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00848 86 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Rops1g00848 86 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 16 76 - -
Rops1g00848 86 SUPERFAMILY Protein kinase-like (PK-like) 15 76 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00848 Rops-Chr1 20782798 20784453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00848 5 76 MAP Kinase Kinase Kinase AT4G26890 47.945 1.59e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops1g00848 Pkinase 4.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00848 K20716 - gmx:100798237 102.834