Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00842 ATGTTCGGGGGCAACGACGGAAATCGAATGCTTCCTGTTTTCATGGATGAGGCTCAATTTCAGTGTCAAACTAATGCGGCAAATCAGTTGCAGTTGTTTGGAAATTTACAAGCTGGATGTAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCATATCAGTTCCATGATTCTGCCTAATAAACGAAGCAGGGAAATGGAAGATATCTCAAAGCAGCAAAGGCTTCAAATTTCCTTAAATTACAATATCTGTCAAGATGATGCTGATCGATCAGCAAGTATTCCAAACCCTAACCCTGTGTCAACAGGATTGAGGCTTTCATACGATGATGACGAGCATAACTCATCTGTTACTTCTGCTAGTGGCAGCATGACTGCCACACCTTCTATCATTTTGTCCCTTGGTGATAATATCAGAACTGAGCTTGATAGGCAGCAAGAAGAGTTGGACCAGTATGTTAAACTTCAGAAGGAACAATTGTCAAAAGGAGTCAGAGACATGAAGCAAAAACACATGGCTTCTCTCTTCACTTCCATTGAGAAAGGTATTAGTAAGAAGCTAAAGGAAAAAGATGTGGAGATAGAGAACATGAACCGTAAAAGTAGGGAGCTAGCAGAGAGAATAAAGCAGGTGGCTCTTGAAGCAAAAAACTGGCACTACAGAGCAAAGTATAATGAGTCAGTTGTCAGCGCATTAAGGAACAATCTCCAGCAGGCAATTTCACAAGGAGTTGAACAAGGGAAGGAAGGGTTTGGAGACAGTGAAGTTGATGATGCCGCCTCATACATAGATCCCAATAACTTCCTGAGCATTCCAGGTGCGCCTGTGAAATCTATTTACAAGTGCTACCAAGGCATGGAGAATCTATCTTGCAGAGCATGCAAAGCAAAGGAGGTTTCCATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAAGATTGTGATGGATTTATCAATGTTTGTCCTGTATGCCAATTGATTAAAACTGCAAGTGTCGAGGTCTATCTGTCTTAA 1017 0.4149 MFGGNDGNRMLPVFMDEAQFQCQTNAANQLQLFGNLQAGCSVDPVNYFGNEHISSMILPNKRSREMEDISKQQRLQISLNYNICQDDADRSASIPNPNPVSTGLRLSYDDDEHNSSVTSASGSMTATPSIILSLGDNIRTELDRQQEELDQYVKLQKEQLSKGVRDMKQKHMASLFTSIEKGISKKLKEKDVEIENMNRKSRELAERIKQVALEAKNWHYRAKYNESVVSALRNNLQQAISQGVEQGKEGFGDSEVDDAASYIDPNNFLSIPGAPVKSIYKCYQGMENLSCRACKAKEVSMLLMPCRHLCLCKDCDGFINVCPVCQLIKTASVEVYLS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00842 338 Coils Coil 187 214 - -
Rops1g00842 338 Pfam Zinc finger, C3HC4 type (RING finger) 288 326 - -
Rops1g00842 338 CDD mRING-HC-C3HC5_CGRF1-like 291 325 - -
Rops1g00842 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Rops1g00842 338 MobiDBLite consensus disorder prediction 88 122 - -
Rops1g00842 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 53 335 IPR017066 -
Rops1g00842 338 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 277 337 - -
Rops1g00842 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Rops1g00842 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 338 IPR013083 -
Rops1g00842 338 MobiDBLite consensus disorder prediction 88 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00842 Rops-Chr1 20689396 20695584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00842 287 336 C3H Transcription Factor Family AT1G73950 38.000 1.20e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00842 K19042 - gmx:100791550 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00842 1 20689396 20695584 Rops1g00842 1 20689396 20695584 ECH