Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00841 ATGCAGGTAAGTGTCCCATGCAGCAGTTTATCAATGGTGGTGACAGTTAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTTCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCAAACAAGGCTTTGAACAGTTATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGAAGTAATTCCAATAAGCAATTTTGTGAATAAACCCCCAGAGAAGAGACAACGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTAGATCATGACTCCCATGTGGACCCTCATGATGCTGAGGTCAATGAAGAAGGTCAAGGTTTCCGTGGAAGAAAGGTCCCAAGGAATTCCATCTTGGAAAGGACACCATTTGAGTGA 573 0.4328 MQVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEEDANKALNSYSASMMTYSDCEEEEVIPISNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEESCSQTDQLVDHDSHVDPHDAEVNEEGQGFRGRKVPRNSILERTPFE* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00841 190 Gene3D High mobility group box domain 86 151 IPR036910 -
Rops1g00841 190 SUPERFAMILY HMG-box 84 137 IPR036910 -
Rops1g00841 190 PANTHER PROTEIN YABBY 6-RELATED 2 150 IPR006780 GO:0007275
Rops1g00841 190 FunFam Axial regulator YABBY 4 83 149 - -
Rops1g00841 190 MobiDBLite consensus disorder prediction 139 190 - -
Rops1g00841 190 CDD HMG-box_SF 95 138 - -
Rops1g00841 190 MobiDBLite consensus disorder prediction 147 183 - -
Rops1g00841 190 Pfam YABBY protein 2 138 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00841 Rops-Chr1 20655236 20656997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00841 1 190 C2C2-YABBY Transcription Factor Family AT1G23420 53.171 4.71e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops1g00841 YABBY 1.8e-51 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00841 K25796 - gmx:100804172 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00841 1 20655236 20656997 Rops1g00841 1 20655236 20656997 ECH
Rops1g00841 1 20655236 20656997 Rops2g03004 2 53410608 53412514 PCT