Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00833 ATGGAACTTAGTGGTTCGGTTTTCTGGATACTGGGTTTGCTTCTTCTGGTGTTGATGGATATTTCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTATGAAGTTGTAGCTCTTGTGGCCATAAAGAATGAGTTGATTGATCCTCACAATGTCCTGGAGAATTGGGATATTAATTCTGTTGATCCATGTAGCTGGAGGATGATTACTTGTTCTCCAGATGGCTACGTTTCTGCATTGGGATTGCCTAGTCAGAACTTGTCTGGTACACTCTCTCCTGGGATTGGAAACCTTACCAACTTACAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAAGATTCCTGCTACAATAGGAAACCTGGAAAAGCTTCAGACACTTGATCTCTCCAATAATGCATTTAGTGGTTTGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGCGGTTAAATAATAACAGCTTGACAGGAGCCTGCCCTCAGTCTCTTAGCAACATTGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCAAGACTATCAGCAAGAACATTAAAGATTGTGGGTAACCCATTAATTTGTGGTCCAAAAGCAAACAATTGTTCTGCTGTTTTACCAGAACCACTTTCCTTCCCACCGGATGCATTAAGAGCCCAATCAGACTCTGGTAAAAAAGGCCATCATGTGGCACTTGCTTTTGGTGCTAGTTTTGGTGCTGCTTTTGTTATTGTGATCATAGTTGGGTTTCTTGTTTGGTGGCGGTATAGACACAACCAGCAGATATTCTTTGATATTAATGAGCATTATGATCCAGAGGTGCGCCTTGGTCATTTAAAAAGGTATTCATTCAAAGAGCTTCGGGCTACAACAGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCAGTCTTGAATGATGGGTCTGTTGTGGCTGTTAAAAGGTTAAAGGACTATAATGCAGCAGGTGGTGAGATCCAATTTCAAACAGAAGTAGAGACAATAAGTTTGGCTGTTCACCGGAATCTTCTGAGGCTTCAGGGGTTTTGCAGTACTCAGAATGAAAGGCTCCTCGTTTATCCATATATGCCTAATGGCAGTGTAGCCTCTAGATTAAAAGATCATATTCATGGTAGACCAGCTTTAGATTGGAGAAGGCGGAAGAGAATAGCTTTAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCAAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTAGATAAAGATCTAAAGGGCAACTTTGACCTTGTTGAATTGGAAGAAATGGTTCAGGTTGCACTCTTGTGTACACAATTTAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTAGCTGAGAGATGGGAAGCCTCACAGAGGATTGAAACACCAAGATTCAGGTCTTGTGAAAATCCCCCTCAAAGATATTCAGATTTAATAGAGGAATCATCACTCATAGTAGAAGCCATGGAGCTCTCTGGCCCTAGGTGA 1602 0.4213 MELSGSVFWILGLLLLVLMDISSAALSPSGINYEVVALVAIKNELIDPHNVLENWDINSVDPCSWRMITCSPDGYVSALGLPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGKIPATIGNLEKLQTLDLSNNAFSGLIPSSLGGLKNLNYLRLNNNSLTGACPQSLSNIEGLTLVDLSYNNLSGSLPRLSARTLKIVGNPLICGPKANNCSAVLPEPLSFPPDALRAQSDSGKKGHHVALAFGASFGAAFVIVIIVGFLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRATTDHFNSKNILGRGGFGIVYKAVLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLQGFCSTQNERLLVYPYMPNGSVASRLKDHIHGRPALDWRRRKRIALGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCENPPQRYSDLIEESSLIVEAMELSGPR* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00833 533 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 409 494 - -
Rops1g00833 533 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Rops1g00833 533 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Rops1g00833 533 ProSiteProfiles Protein kinase domain profile. 302 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00833 533 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Rops1g00833 533 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Rops1g00833 533 Pfam Protein kinase domain 303 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00833 533 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Rops1g00833 533 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Rops1g00833 533 SMART LRR_typ_2 121 144 IPR003591 -
Rops1g00833 533 SMART LRR_typ_2 97 120 IPR003591 -
Rops1g00833 533 SMART LRR_typ_2 145 168 IPR003591 -
Rops1g00833 533 Gene3D Transferase(Phosphotransferase) domain 1 408 502 - -
Rops1g00833 533 SUPERFAMILY Protein kinase-like (PK-like) 287 512 IPR011009 -
Rops1g00833 533 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Rops1g00833 533 SUPERFAMILY L domain-like 32 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00833 Rops-Chr1 20541580 20546853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00833 409 533 Receptor kinase-like Gene Family AT1G60800 69.403 1.19e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops1g00833 Pkinase 7.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00833 - - gmx:100806943 738.028