Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00829 ATGGAGGAAATGTATGGAGCACCGTCGACGGTGGATTACGCCGACAAGGCTCTGATGACGCCGGAGAATCTGATCTTCCCAGCGGATTACCAAAGCTACCTCATGTCCACCACCACCACCGCAGGAGGCCGGATTCCAATGTTCGGATCCGACGACCTCCTCACGGCGGAACCCTCCTCCGTCGTGGCCATTCCGGGCGGAATTCAGCGGCAGGGAGATGATGACGTGGCATCCACTTTCATGAAAGCTAAAATCGCTTCTCACCCTTACTACCCTCGCCTCCTCCAAGCTTACATCGACTGCCAGAAGGTTGGGGCGCCTCCCGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAATGACCCGTTAAAGAGGGAAGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAGTATAAATCAGACCTGGCTCGACCTTTTGATGAAGCAACTACCTTCCTCAACAAGATCGAAATGCAGCTTAGCCATCTCTGCACTGGTGCTTCCGTTCCCTCTCTTTCTGATGATGGGGGTGTATCTTCGGAGGAAGATTTTAGTACTGGAGATGGTGATCCTCAAGATGGACAGTTAAAGGGAGAAGATCGTGAGCTCAAGGATAGGCTCTTACGCAAGTTTGGGAGTCACATTGGTACTTTGAAATTGGAATTTTCGAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAACACTGCTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAACTCAACGGGGCTAGACCAGAAGCAAATTAACAATTGGTTCATTAATCAAAGAAAACGTCACTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATCTGACCGGACGGTTCCTTGCTGATGAATGA 963 0.4912 MEEMYGAPSTVDYADKALMTPENLIFPADYQSYLMSTTTTAGGRIPMFGSDDLLTAEPSSVVAIPGGIQRQGDDDVASTFMKAKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDPLKREVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVPSLSDDGGVSSEEDFSTGDGDPQDGQLKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELANSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGRFLADE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00829 320 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Rops1g00829 320 SUPERFAMILY Homeodomain-like 238 309 IPR009057 -
Rops1g00829 320 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Rops1g00829 320 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Rops1g00829 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 307 - -
Rops1g00829 320 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Rops1g00829 320 SMART KNOX2_2 129 180 IPR005541 GO:0003677|GO:0005634
Rops1g00829 320 Gene3D - 236 310 - -
Rops1g00829 320 SMART HOX_1 239 304 IPR001356 GO:0003677
Rops1g00829 320 SMART ELK_2 217 238 IPR005539 GO:0003677
Rops1g00829 320 Pfam KNOX2 domain 133 179 IPR005541 GO:0003677|GO:0005634
Rops1g00829 320 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Rops1g00829 320 CDD homeodomain 249 301 IPR001356 GO:0003677
Rops1g00829 320 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Rops1g00829 320 Pfam ELK domain 217 238 IPR005539 GO:0003677
Rops1g00829 320 MobiDBLite consensus disorder prediction 186 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00829 Rops-Chr1 20206042 20213393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00829 1 320 Homeobox Transcription Factor Family AT1G23380 65.861 3.82e-147 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops1g00829 KNOX2 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00829 - - gmx:100785764 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00829 1 20206042 20213393 Rops1g00829 1 20206042 20213393 ECH
Rops1g00829 1 20206042 20213393 Rops2g02985 2 53014965 53022389 PCT