Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00827 ATGAAACATCCATGCCAGTTCAAGCATGTCAGTAGTACGCTCCTAATAAAACCTTCACCTACTCATCCATCTCACAGTCACACACACCTACAATTCAATGCTCACTGTTTTTCTATTCAGAGCTCAGCACAGCACAACACAGTTCTTTGTGAACAGCCTACAAGAGAAAGTGATTCAGATCAGATCATCCCAAAAATGAAGAAAGCAGTCTCTCTTGTGTTCCTTCTCATCAAGTTACTATTACTATCAGATATTGTAATAGCAGAACCAAGGGCCAAGACAGTTATAATAACATGTGGTCATCAACTAGAGCACAATACCACTATCTTTGTTCCAAATTTTGTTGCAACAATGGAGAAAATCAGTGAACAGATGCGTAATACTGGCTTTGGCACAGCAGTTACAGGGACAGGACCTGATACTAACTATGGCCTGGCACAGTGCTACGGAGATCTTTCATTACTTGACTGTGTATTATGTTATGCTGAGGCACGCACGGTTCTTCCTCAGTGCTTCCCTTATAATGCTGGTCGCATTTACCTTGATGGTTGCTTCATGAGGGCTGAGAATTATAGTTTCTTTGATGAGTATACAGGACCAGGAGATAGAGCTGTGTGTGGGAACACAACTAAGAAGAACTCAAGTTTTCAAGCAGCAGCAAAGCAAGCAGTTTTCCAAGCAGTTCAAGATGCACCTAACAACAAAGGCTATGCAAGGGGGAAGGTTGCTGTATCAGGAACAGCAAATGAATCTGCTTATGTTCTTGCTGATTGTTGGAGGACATTGGATACAAGCTCTTGTAAAGCGTGTCTTGAGAATGCATCTTCTTCCATATTGGGATGCTTGCCTTGGTCAGAAGGGAGAGCACTCAACACTGGTTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGAAAATGGTAGTTCAGGAGGTAATGTAGTAGTGATAGTGGTTGCAGTAGTCAGTTCGGTGATTGTTATGGTGGTTGGAGTAACTATTGGGATTTATATCTGGAAACAGAGATACATTCAAAAGAAACGAAGAGGTTCAAGTGATGCAGAGAAGTTAGCAAAGACTCTTCAGCACAAAAGCTTGAACTTCAAGTACTCTACACTTGACAAGGCAACTGGATCTTTTCATGATGATAACAAATTAGGACAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAATGAGGTCAACATAATTAGCAGTGTGGAACACAAGAATCTAGTCAGACTATTAGGATGCAGTTGTTTAGGACCTGAAAGCCTGCTTGTATATGAATATCTGCCCAACAAAAGTCTTGATCGCTTCATTTTTGATAAAAACAAGGGCAGAGAACTGAACTGGGAAAAGAGATATGAAATTATCATTGGGACTGCTGAAGGATTAGTTTACTTGCATGAGAACTCCAAAATCAGGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGCTTCGTGCTAAAATTGCAGATTTTGGTTTGGCAAGGTCCTTTCAAGAAGACAAGAGCCACATAAGTACAGCCATTGCAGGAACTTTGGGTTATATGGCTCCGGAGTATCTAGCTCATGGTCAATTAACAGAAAAGGCAGACATATATAGTTTTGGAGTGCTACTGCTAGAGATAGTTACTGGTAGACAGAACAACAGGAGCAAAGCATCAGAGTATTCAGACAGCTTAGTTACAGTGACATGGAAGCATTTTCAAGCAGGGACAGCGGAACAATTATTTGATCCAAATCTAGAGTTGCATGAAGACCACAATAGCAATGTTAAGAATGATATTTTAAGAGTGATTCACATAGGACTTCTTTGCACCCAAGAAGTCCCTTCATTACGACCATCTATGTCAAAGGCACTACAGATGCTAACAATGAAGGAAGAGCATCTTGTTGCTCCCTCTAATCCACCCTTCCTTGATGAGAGTACCATGGAACTCTATGACACAAGTGGTGACCCATTTCACCGTCTCAATGCAGCTGATTCAATAGCTACCATGTCCCACAGCTCTTTTTATCCCAGGTGA 2130 0.4094 MKHPCQFKHVSSTLLIKPSPTHPSHSHTHLQFNAHCFSIQSSAQHNTVLCEQPTRESDSDQIIPKMKKAVSLVFLLIKLLLLSDIVIAEPRAKTVIITCGHQLEHNTTIFVPNFVATMEKISEQMRNTGFGTAVTGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNAGRIYLDGCFMRAENYSFFDEYTGPGDRAVCGNTTKKNSSFQAAAKQAVFQAVQDAPNNKGYARGKVAVSGTANESAYVLADCWRTLDTSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSGGNVVVIVVAVVSSVIVMVVGVTIGIYIWKQRYIQKKRRGSSDAEKLAKTLQHKSLNFKYSTLDKATGSFHDDNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCLGPESLLVYEYLPNKSLDRFIFDKNKGRELNWEKRYEIIIGTAEGLVYLHENSKIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADIYSFGVLLLEIVTGRQNNRSKASEYSDSLVTVTWKHFQAGTAEQLFDPNLELHEDHNSNVKNDILRVIHIGLLCTQEVPSLRPSMSKALQMLTMKEEHLVAPSNPPFLDESTMELYDTSGDPFHRLNAADSIATMSHSSFYPR* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00827 709 ProSiteProfiles Protein kinase domain profile. 383 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00827 709 FunFam Cysteine-rich receptor-like protein kinase 2 459 666 - -
Rops1g00827 709 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Rops1g00827 709 ProSiteProfiles Gnk2-homologous domain profile. 198 303 IPR002902 -
Rops1g00827 709 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 143 680 - -
Rops1g00827 709 Gene3D Transferase(Phosphotransferase) domain 1 459 669 - -
Rops1g00827 709 Pfam Protein kinase domain 383 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00827 709 SMART serkin_6 383 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00827 709 ProSiteProfiles Gnk2-homologous domain profile. 92 193 IPR002902 -
Rops1g00827 709 Gene3D - 92 193 IPR038408 -
Rops1g00827 709 Gene3D - 203 303 IPR038408 -
Rops1g00827 709 FunFam Cysteine-rich receptor-like protein kinase 3 202 303 - -
Rops1g00827 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Rops1g00827 709 Pfam Salt stress response/antifungal 206 300 IPR002902 -
Rops1g00827 709 Pfam Salt stress response/antifungal 108 191 IPR002902 -
Rops1g00827 709 FunFam Cysteine-rich receptor-like protein kinase 2 92 193 - -
Rops1g00827 709 FunFam Putative DUF26-domain receptor-like protein kinase family protein 352 458 - -
Rops1g00827 709 CDD STKc_IRAK 389 659 - -
Rops1g00827 709 SUPERFAMILY Protein kinase-like (PK-like) 368 677 IPR011009 -
Rops1g00827 709 Gene3D Phosphorylase Kinase; domain 1 344 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00827 Rops-Chr1 20183612 20188880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00827 79 709 Receptor kinase-like Gene Family AT1G70520 68.711 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops1g00827 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00827 - - gmx:100804094 1122.46