Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00826 ATGTCATTTGCATGGTTTCTGCTTATCTTCCTTTGTAACCATGCATTTGTTGCTCTTGCTGATCCAAGAGCCACAGAGGCTGCAGTTGTATGCACCAACAAAACTGCTCCATTCCCTCAGCAACAAATTTTCTTAGCAAATTTTTATGATGCATTGGAAGCCTTGTCCTCTTTGGTTACTACACAAAGATATGGAGTTGTTGTTAAAGGGACTCAAAATACCACTGTTTATGCTTTTGGTGAGTGCATGAAAGATCTTTCTAAACCAGATTGTGATGTATGTTTTGCACAGTGCAAGACACGGGTTCTGAGGTGTTCTCCATTTCAGAGAGGCATTTGGGGTGGTAGGATCTTCTTTGATGGGTGCTATCTCAGGTATGATGGCTACAACTTCTTCAATCAGAGTCTCAGTCCTCAAGACATGACAGTGTGTGGAACCAAAGATTTTGGTGGGAATAGTAGTGTTTATAAGGATAATATTCTAGAGTTAGTGAGAAATTTGAGTGTGGAAGTACCAAAGAATGATGGGTTCTTTATGGCGTCTGTGAGTCAAAGGAATGTAACTCTTTATGGGTTGGCTCAATGCTGGGAGTTAGTCAATGGCAGTTCTTGCCAGAACTGTTTGGATGAAGCTGTTACTAGCATTGAGTCATGTACTATGAAAGAAGAAGCTAGAGTATTGAATGCTGGATGTTACTTGAGGTATTCAACACAAAAGTTCTACAATAATTCAAGAAATGATGCCCCTCAAGGAACTCAAGGAAGTAGAAATCTTGGTATAATTGTGGCTGCATCATCTGCTGCACTGGCTATTCTGCTGATTGTTGCAACAGTTATTTTCTTTGCAAGGAAGAATGTGCTGAAGCGGAGGAGAGAAAGAAGACAGTTTGGTGTACTATTGAACACGATGAACAAGTCAAAACTAAATGTGCCATATGAAATTCTTGAAAAGGCCACAAATTACTTCAATGAATCCAATAAGCTAGGAGAAGGGGGATCAGGTTCAGTTTATAAAGGAATTCTGCCAGATGGAACTACTGTGGCCATAAAAAGGCTGAGCTTTAACACAACTGAATGGGCAGAACATTTCTTCAATGAGGTCAATTTGATCAGTGGCATTCATCACAAAAATCTAGTTAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAACCAAAGCCTCTATGATCACCTATCTGTTATAAGGAATCTTCAACGGTTGACATGGAAAATCAGGCATAAGATCATATTGGAAACGGCAGAGGGTTTGGCCTATCTTCATGAGGAATCACAAATGAGAATCATTCATAGAGATATAAAATTAAGCAACATTCTGCTTGATGATAGCTTCACTCCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGATGACAAGTCTCACATTAGCACAGCCATTTGTGGCACACTGGGTTATATGGCTCCAGAGTATGTAGTTCTGGGGAAGTTAACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTAGTTATTGAAATTGTATCTGGAAAAAGCAGCAGATCCTTTGTTCAAAATTCATGTCCCATCCTACACATGGTTTGGAGCCTTTATGGATCAAATAGGCTATGTGACATTGTTGATCCAATCCTAGAGGGAAATTATCCAGCAGAGGAAGCATGCAAACTCCTTAAGATAGGGCTACTTTGTGCACAAGCATCTGCAGAGCTAAGACCACCAATGTCAATAGTTGTGAAAATGATTACCAACAATCATGAAATCACTCAGCCAACACAACCCCCATTTCTTAATTGTGGAAGTGCAGAATTCAGCAACTCTACTATAGCAGGAGATGGTTTTCAACTTGGATCATACACTCAGTCTTCAGGGGACAGCATGGCCGAAAGTCTTAGTGAGCATGGATTGCTTACTCTATAA 1944 0.4002 MSFAWFLLIFLCNHAFVALADPRATEAAVVCTNKTAPFPQQQIFLANFYDALEALSSLVTTQRYGVVVKGTQNTTVYAFGECMKDLSKPDCDVCFAQCKTRVLRCSPFQRGIWGGRIFFDGCYLRYDGYNFFNQSLSPQDMTVCGTKDFGGNSSVYKDNILELVRNLSVEVPKNDGFFMASVSQRNVTLYGLAQCWELVNGSSCQNCLDEAVTSIESCTMKEEARVLNAGCYLRYSTQKFYNNSRNDAPQGTQGSRNLGIIVAASSAALAILLIVATVIFFARKNVLKRRRERRQFGVLLNTMNKSKLNVPYEILEKATNYFNESNKLGEGGSGSVYKGILPDGTTVAIKRLSFNTTEWAEHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLYDHLSVIRNLQRLTWKIRHKIILETAEGLAYLHEESQMRIIHRDIKLSNILLDDSFTPKIADFGLARLFPDDKSHISTAICGTLGYMAPEYVVLGKLTEKADVYSFGVLVIEIVSGKSSRSFVQNSCPILHMVWSLYGSNRLCDIVDPILEGNYPAEEACKLLKIGLLCAQASAELRPPMSIVVKMITNNHEITQPTQPPFLNCGSAEFSNSTIAGDGFQLGSYTQSSGDSMAESLSEHGLLTL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00826 647 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Rops1g00826 647 CDD STKc_IRAK 328 592 - -
Rops1g00826 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Rops1g00826 647 ProSiteProfiles Protein kinase domain profile. 322 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00826 647 SMART serkin_6 322 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00826 647 Gene3D Transferase(Phosphotransferase) domain 1 398 602 - -
Rops1g00826 647 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Rops1g00826 647 FunFam Cysteine-rich receptor-like protein kinase 3 140 240 - -
Rops1g00826 647 Pfam Protein kinase domain 322 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00826 647 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Rops1g00826 647 Pfam Salt stress response/antifungal 31 127 IPR002902 -
Rops1g00826 647 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Rops1g00826 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 77 615 - -
Rops1g00826 647 FunFam Cysteine-rich receptor-like protein kinase 2 398 598 - -
Rops1g00826 647 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Rops1g00826 647 FunFam Cysteine-rich receptor-like protein kinase 2 288 397 - -
Rops1g00826 647 SUPERFAMILY Protein kinase-like (PK-like) 308 607 IPR011009 -
Rops1g00826 647 FunFam Cysteine-rich receptor-like protein kinase 2 24 131 - -
Rops1g00826 647 Gene3D - 25 131 IPR038408 -
Rops1g00826 647 Gene3D - 140 240 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00826 Rops-Chr1 20176998 20180250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00826 18 487 Receptor kinase-like Gene Family AT1G70530 59.236 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops1g00826 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00826 - - gmx:100802190 1028.08