Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00820 ATGATCACAACTATGGCTTCTCTAATTGAACTTCTTTCTCTTCTCTTCCCTCTACTGGCAGTTTCATTTGCAAGTGTGTTTTCCTTGGAAGTTTCAATCAAAACAACATTCTTGGAACCTTTTAAATGTTCTGCAAAGATCAGGACATGCAATGCCTCACTCTACCATATAAGCTATGGTCTCAAAATAGAAGAAATAGCCATCTTTTACTCTGTTAATTCCTCACAAATCAAACCCATAAAGCGTGGCACCAAACAAGATTACCTTGTAATGGTACCTTGTTCTTGCAAAAGCTCCAATGACCTCAGCGGATATTTCTATGATACCACCTATAAGGTGAAGCTTAATGAAGCTTTTGTTGATATTCAAAACCTGATTTATAGTGGGCAAGCCTGGCCTGTTAGCAAAGAAGTGGTCACAAATGAGAATTTAGCAATACATATTCCTTGTGGGTGTTCAGAAAGTGATTCTCAAATTGTTGTCACATATACAGTCCAGAGGAATGATACATCATCATCAATTGCTCATCTGCTAAATGCTACTGTTGATGGCATGGTGATTATGAATGAAGTTATGGCTCCAAATCCCACATTCATAGATATTGGTTGGGTGTTATTTGTTCCCAATGAATTGAAAGGGCTTCCACTTTCCCATGGAAAAGAAAAGAAACACAAGTGGGAGATAATTATTGGCGTCTTAGCAGGTGTGACTTTGTTTTCAACTATTACTTTGATCATTCTCATTCTCGTACTTAGAAGAAATAGAGGCTATGGAACCAGCAAGGATGATCCAAACGCTGTCTCTAAAAGATCAATGGCCAATAGAACTATTTCCTTAAGGAACCGAGACTTTCATAAAGAATATATGGAAGATGCAACATCATTCGAGTCAGAAAGACCGGTTATTTATACTCTTGAGGAGATTGAACATGCTACAAATGACTTTGATGAAACTCGAAGGATTGGAGTTGGTGGATATGGAAGTGTGTATTTTGGAATGTTAGGGGAGAAGGAAGTTGCTGTGAAGAAGATGAGGTCTAACAAATCCAAAGAATTCTATGCAGAACTCAAAGCCTTATGTAAGATCCATCATATTAACATTGTGGAGTTGTTGGGATATGCCAGTGGAGATGATCACCTTTATTTGGTGTATGAGTATGTTCCCAATGGATCTCTCAGTGAACATCTTCATGATCCATTACTTAAAGGTCATCAGCCTCTTTCTTGGTGTGCTAGGATTCAAATTGCATCGGATGCAGCAAAAGGTATTGAATACATACATGATTACACGAAAGCAAGATATGTGCACCGCGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTAGCAGATTTTGGACTTGCCAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTTTAAAGGAGCTTCAAGTGACCATAAAAACCGATGTATTTGCATTTGGAGTAGTTCTGGCAGAGTTGATAACAGGAAAACGTGCACTATTTCGTGACAACCAAGAAGCCACCAATATGAAATCACTTATTGCAGTTGTTAACGAAATATTTCAACATGATGACCCAGAGACTGCTTTGGAAGATGTCTTAGATGGGAATCTTCGACGTAGCTACCCCATGGAAGATGTCTACAAGGTGGGGGAACTATCTCATTGGTGCTTGCGTGAAGATCCAGTGGACAGGCCTGAAATGAGGGAGATTGTTGTGGCATTGTCAAAGATTGTAATGTCCTCCATAGAGTGGGAAGCATCATTAGGTGGAGACAGCCAAGTCTTCAGTGGGGTATTTGATGGAAGATGA 1860 0.3946 MITTMASLIELLSLLFPLLAVSFASVFSLEVSIKTTFLEPFKCSAKIRTCNASLYHISYGLKIEEIAIFYSVNSSQIKPIKRGTKQDYLVMVPCSCKSSNDLSGYFYDTTYKVKLNEAFVDIQNLIYSGQAWPVSKEVVTNENLAIHIPCGCSESDSQIVVTYTVQRNDTSSSIAHLLNATVDGMVIMNEVMAPNPTFIDIGWVLFVPNELKGLPLSHGKEKKHKWEIIIGVLAGVTLFSTITLIILILVLRRNRGYGTSKDDPNAVSKRSMANRTISLRNRDFHKEYMEDATSFESERPVIYTLEEIEHATNDFDETRRIGVGGYGSVYFGMLGEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARIQIASDAAKGIEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESLKELQVTIKTDVFAFGVVLAELITGKRALFRDNQEATNMKSLIAVVNEIFQHDDPETALEDVLDGNLRRSYPMEDVYKVGELSHWCLREDPVDRPEMREIVVALSKIVMSSIEWEASLGGDSQVFSGVFDGR* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00820 619 Gene3D Transferase(Phosphotransferase) domain 1 387 604 - -
Rops1g00820 619 SMART serkin_6 315 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00820 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Rops1g00820 619 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Rops1g00820 619 Pfam Protein kinase domain 316 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00820 619 SUPERFAMILY LysM domain 161 208 IPR036779 -
Rops1g00820 619 FunFam PTI1-like tyrosine-protein kinase 3 387 605 - -
Rops1g00820 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 39 615 IPR044812 GO:0019199|GO:0045087
Rops1g00820 619 FunFam Kinase family protein 291 386 - -
Rops1g00820 619 Gene3D LysM domain 154 212 IPR036779 -
Rops1g00820 619 ProSiteProfiles Protein kinase domain profile. 315 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00820 619 SUPERFAMILY Protein kinase-like (PK-like) 298 591 IPR011009 -
Rops1g00820 619 Gene3D Phosphorylase Kinase; domain 1 293 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00820 Rops-Chr1 20088181 20092354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00820 295 619 Receptor kinase-like Gene Family AT1G51940 51.964 3.19e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops1g00820 Pkinase 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00820 - - gmx:100800907 967.607