Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00810 ATGCAACAAAAGCAAGGATTACGGCGAAAGAAGAACCAAGCAAATTCAGCTTGGAACCTTAACCGCAACCGTTCCCTTCCCTCTTCCTCGTGTGTTCTCTCTGATACACATGAACCACAACAACAACAACGTAGTCCTCTCAAGCTCCTAGCTTTATCCGAAACCCATCTTCTTCTTCTTCTTCCAAACTCCTCTGCCACCATGCCTCTTCTACTCTCAGTTACACAACCGTGGTCACTTCCTCCAACCCCTCGTCACAAAAACCAAAACAAACATCTAATCACAGCCTCAGAGATGCGCTTCCATTTTTCCGCAACGCGACCGTTTCCCGGTTTCTCTTCAAGGCGCATTCTCTTAGCTAAGTCAGCGTCCATAAACGGGGTTTCGGTTCAGAACAATCAAGAAGAAGCTTCTTCTTCCGGTGAAGTCAATGCTGCTGAGTTTTTCGAGAAAATTCGGAAATGGCTTGGGTTCATCCCTTCGATTCTTCCCGGTGGAAGCTGGTGGAACTTCTCCGATGAGGTTGAGGGTCAAGTCATGGCTCAGCCTGTGACCGTGTGGTGCGCTTTGGCAAAAATGTGGGACCTTGTTGCTCGAGATAGATGGGTCATTTTTGCAGCTTTCTCTGCTCTGATTCTCGCAGCAGTTTCAGAGATTTCGATACCACATTTCTTGACAGCATCTATCTTCTCGGCAAAAGATGCGGATATTACAGTTTTTCATCGGAATGTGCGTCTGTTGGTTCTGTTGTGTATAACTTCGGGAATATGCAGTGGGATACGAGGTGGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATATTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGAAACAGTAGGTGACTTGACAAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGCTCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGGTTTTGTCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTGGCAGCAGCTATGTTACATTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTTACAGCTTCTGCTAATGACGTAGCTCAAGAGACATTCTCTCTTGTTAGAACTGTCCGAGTTTATGGAACAGAAGAAGAAGAACTTGGAAGGTACACATGGTGGCTGGGGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCAAATGGATTTTGGAATTTCAGCTTCAACACTCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGGATGTCTATTCTTGCGGGTCATATTACGGCAGAGACACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCACTTAATGGATCTCTCACCTAGCAGCCAATTCATTGAAAGAGGAGCAAAGTTGCAGAGATTAACAGGGCATATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGACCAACGGTATCTGTAGTGCAACATGTAAACTTTGTTGTCCGTCCTGGTGAGGTGGTTGCTATCGTTGGTCTTAGTGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTACGAGCCTACAAATGGCCAGATTTTGGTAGATGGTGTCCCTCTTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGACAGGAACCCAAGCTATTCCGGATGGATATTAGTTCAAACATCAGATATGGATGCACCCAAGATGTTAAGCAGGAAGATGTTGAATGGGCTGCGAAGCAGGCCTATGCCCATGACTTCATCTCAGCTCTTCCCAGTGGTTATGAAACACTTGTCGATGATGATCTGTTAAGCGGGGGACAAAAGCAGCGTATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCATCAAGAAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAGTTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTATATGCACGGTTGACTAGAAAACAGGCTGATGCCGTGGCTTGA 2298 0.4382 MQQKQGLRRKKNQANSAWNLNRNRSLPSSSCVLSDTHEPQQQQRSPLKLLALSETHLLLLLPNSSATMPLLLSVTQPWSLPPTPRHKNQNKHLITASEMRFHFSATRPFPGFSSRRILLAKSASINGVSVQNNQEEASSSGEVNAAEFFEKIRKWLGFIPSILPGGSWWNFSDEVEGQVMAQPVTVWCALAKMWDLVARDRWVIFAAFSALILAAVSEISIPHFLTASIFSAKDADITVFHRNVRLLVLLCITSGICSGIRGGCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNALQGGGSLIYLLVLSWPLGLCTLVICSILAAAMLHYGRYQKKAARLIQEVTASANDVAQETFSLVRTVRVYGTEEEELGRYTWWLGKLADISLRQSAANGFWNFSFNTLYHSTQVIAVLFGGMSILAGHITAETLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFIERGAKLQRLTGHIEFLNVSFHYPSRPTVSVVQHVNFVVRPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDGVPLKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTQDVKQEDVEWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDGGQVVENGSHRELLLKDGLYARLTRKQADAVA* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00810 765 FunFam Multidrug ABC transporter ATP-binding protein 512 764 - -
Rops1g00810 765 SUPERFAMILY ABC transporter transmembrane region 192 502 IPR036640 GO:0005524|GO:0016020
Rops1g00810 765 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 520 759 IPR003439 GO:0005524
Rops1g00810 765 FunFam ABC transporter B family member 26, chloroplastic 186 505 - -
Rops1g00810 765 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 205 486 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g00810 765 ProSitePatterns ABC transporters family signature. 658 672 IPR017871 GO:0005524|GO:0016887
Rops1g00810 765 CDD ABC_6TM_TAP 207 494 - -
Rops1g00810 765 Pfam ABC transporter transmembrane region 205 471 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g00810 765 SMART AAA_5 547 742 IPR003593 GO:0016887
Rops1g00810 765 Gene3D ABC transporter type 1, transmembrane domain 188 505 IPR036640 GO:0005524|GO:0016020
Rops1g00810 765 Pfam ABC transporter 539 686 IPR003439 GO:0005524
Rops1g00810 765 PANTHER ABC TRANSPORTER B FAMILY 199 757 IPR039421 -
Rops1g00810 765 Gene3D - 510 764 IPR027417 -
Rops1g00810 765 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g00810 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 760 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00810 Rops-Chr1 19940864 19949276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00810 275 763 Calmodulin-binding Proteins AT2G36910 34.337 3.13e-70 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00810 - - gmx:100813359 1136.71