Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00807 ATGCTCGGACCCTCCCAACCCCCTCCCAAATCCACTATCAAATTCCTCTGCAGCTACGGCGGTAAAATCCTCCCCCGTTACCCCGACGGAAAACTCCGTTACCTCGGTGGCCAGACACGTGTCCTCGCCGTCGATCGCTCCATTCCATTTTCCGAGCTGATGTCGAAGCTTGAAGAGCTTTGCGGTTCTTCCGTGAGGCATCTTCGCTGTCAGTTACCGGCCGAAGACCTCGACGCCTTGGTTTCCATAACTTCCGATGAGGATCTCACCAATCTCATCGAGGAATACGATCGCGTGGCTTCACCATCGCCGTCGTCGTTGAAGATCAGAGCCTTTCTTTCGCCGCCGAGAACTTCGTACAAGGTTTCCACACCTCCTCCGTCGTCATCTCTGTCAAAATCAGCATCTTCCTCTTCCTCGTCGTCGTCGTCTTCGTCTTCGTCTTCTTCGTCGTATTGCAGCCATACCGGCGGCTGTTCTGGCATGAGGTATAAGGCAACGGCGGCGCCGGTTGTCGACCGCTGCGTCCATCAGATGTCGCCGCCGGTGGCGTATCCGGTGGTCGGCGTGGAGAAAACTTCTAGAAAGAATAATAATATTCCTCTGCCACGCTACGGTTACCATCATCATGCTCAGGGGAAAACTGGCCACATCTATCTGATCCATATTGGAAACCACTGGCAATAG 687 0.5415 MLGPSQPPPKSTIKFLCSYGGKILPRYPDGKLRYLGGQTRVLAVDRSIPFSELMSKLEELCGSSVRHLRCQLPAEDLDALVSITSDEDLTNLIEEYDRVASPSPSSLKIRAFLSPPRTSYKVSTPPPSSSLSKSASSSSSSSSSSSSSSSSYCSHTGGCSGMRYKATAAPVVDRCVHQMSPPVAYPVVGVEKTSRKNNNIPLPRYGYHHHAQGKTGHIYLIHIGNHWQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00807 228 SMART PB1_new 27 114 IPR000270 GO:0005515
Rops1g00807 228 Pfam PB1 domain 29 113 IPR000270 GO:0005515
Rops1g00807 228 CDD PB1_UP2 16 113 - -
Rops1g00807 228 Gene3D - 31 113 - -
Rops1g00807 228 MobiDBLite consensus disorder prediction 117 151 - -
Rops1g00807 228 PANTHER OS05G0427100 PROTEIN-RELATED 7 199 - -
Rops1g00807 228 SUPERFAMILY CAD & PB1 domains 29 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00807 Rops-Chr1 19909532 19912187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00807 13 113 MAP Kinase Kinase Kinase AT5G57610 53.922 3.64e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00807 - - gmx:100815157 283.878