Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00806 ATGGACATGGTTCTAGCTATTGATGTATCCATGAATAATCTCTCAGGCAGAATCCCACCACAACTTGAAAATTGCTTAGCATTGGAGTACCTCAACCTTTCTGGTAATTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTCTATATTCGAGCACTTGATGTGTCTTCAAATCAATTGACTGGGGCAATACCGGAGTCCCCGCAGCTTGTCTTCCTCTCTCGAGAAACTCAATTTCTCTTTCAACAAATTCACAGGAATGTCTCAAACAATGGAGCATTTTCATCTCTGACCATTGACTCTTTCCTTGGAAATGATGGTCTCTGTGGCCCAATTAAAGGCATGCAACGTTGTCATAGGAAACACAGTTATCATTTAGTGTTCTTGTTAATTCCTACGTTACTATTTGGCACTCCTCTGCTGTGCATGTTTAGGTACTCAATGGTAAAAGTGAGAAAGCGATTTGCTATAGTTAGCAGAGGTGACTTGGAGGATGAAGAAGAGGAAACGAAAGAGCTCCAATACCCAAGGATTTCGTATAGACAATTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCCTAATTGGTTCGAAGCCGGTTTGGACAGTCTACAAAGGAGTACTCCAAGATAATACAAGAGTAGCAGTGAAGGTATTAGATACAACAACAACAACAGCTGGTGAGATTTCAAGGAGCTTTAGAAGGGAATGTCAAATCCAGAAAAAGATCAGGCACAGAAATTTAATAAGGATCGTCACAATTTGCAGCAAGCCAGGGTTTAAATCTATTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGGCATCTATATCCAAGCCATGAGTTAAGCCAGAGGTTGGATGTGGTTCAGTTAGTGAGAATATGCAGTGATGTGGCTGAGGGAATGTCCTATCTGCACCATTACTCTCCTGTGAAAGTAGTGCATTGTGATCTTAAGCCGAGCAATATACTCCTTGATGATGATCCGGACTTTGGTTACTGA 1014 0.4201 MDMVLAIDVSMNNLSGRIPPQLENCLALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLTGAIPESPQLVFLSRETQFLFQQIHRNVSNNGAFSSLTIDSFLGNDGLCGPIKGMQRCHRKHSYHLVFLLIPTLLFGTPLLCMFRYSMVKVRKRFAIVSRGDLEDEEEETKELQYPRISYRQFREATGGFSASSLIGSKPVWTVYKGVLQDNTRVAVKVLDTTTTTAGEISRSFRRECQIQKKIRHRNLIRIVTICSKPGFKSIVLPLMPNGSLERHLYPSHELSQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDDDPDFGY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00806 337 SUPERFAMILY L domain-like 7 71 - -
Rops1g00806 337 SUPERFAMILY Protein kinase-like (PK-like) 172 335 IPR011009 -
Rops1g00806 337 Gene3D Phosphorylase Kinase; domain 1 163 269 - -
Rops1g00806 337 Gene3D Ribonuclease Inhibitor 2 128 IPR032675 -
Rops1g00806 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Rops1g00806 337 PANTHER OS04G0122200 PROTEIN 5 332 - -
Rops1g00806 337 Gene3D Transferase(Phosphotransferase) domain 1 271 336 - -
Rops1g00806 337 Pfam Protein kinase domain 197 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00806 337 SMART serkin_6 192 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00806 337 ProSiteProfiles Protein kinase domain profile. 192 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00806 337 Pfam Leucine Rich Repeat 28 47 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00806 Rops-Chr1 19892895 19893908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00806 4 67 Receptor kinase-like Gene Family AT3G47570 42.188 1.68e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops1g00806 Pkinase 8.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00806 - - gmx:100792446 485.723