Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00804 ATGGAGGAAGCACTGAGGCTTCTCAATGGTATGGCTCCGATTCCAGAACCCGACCCGCAAGGCTCCGACCAGAAAAAGTGTACCATCGCTAACAAGAGGACGTTAAGAGATAACGGCGGCGGTGGAGTCATGAGGTACCGCGGTGTTAGGCGCAGGCCGTGGGGTCGTTATGCTGCGGAAATAAGGGACCCACAATCGAAGGAACGACGTTGGCTTGGAACCTTCAACACGGCGGAGGAAGCCGCCTGTGCCTACGACCGCGCCGCCAGAGCCATGAGGGGTTTTAAGACTCGAACCAATTTCGTTTACCCAACTTCACCTCCTCACCCTTATTCTGCAACAGAACACCACCTTTTCACTACCTTCAACTTCCCGAAACATTCTCAGCAACCTTTTAACAAGACCAACACTCATAACCGCCACATCCCAGGTTCTGGTGCTTATTGGCCATCATGCTCTGACCAGCGAAACTCTTCTTCTCCACTTGACATGCTTTTGTATCGTGAGTTTCTTAACTCTTCATCTTGTAACCCTTCTTTGGTTTCTTCTGCTCAGTTCCAAGACCAGTTTTCCTACAACAAGGGAAGTTCTTCTTCTTTTTGTTCTTCTTATTATTCGTCCTTGCCTACACCTTCTTGTCTCACAGGTGTGAAACCATGTGGTGATAATGGTTATAGTGTGAGTGGTTCTTCTTCTTCTTCTGTAAACATGAGCATCGATCCTTGTCTTATTGGTGCTGATGGAACCAAAATCAATGAACCTCATGATGAAGGCTTGGAGTTTTTCCCGAGAGAGTATTCGGACTCTGGATTATTGGAAGAGATAGTTCATAGGTTCTTGCCAAAATCAAAGACTGAGATATGCGAGAAACCACCAAAAGTTGAGACTTTCTGCAACCCTGAGTCAGTATCTATGCCTATATCTGATAACATGCTTGTTTCCAATGCTCAATGTGGTAATGAAACGAAGAGGGTACTTCCCAAGAACAAAGGTTTTGATGGTGGCTCTTTTGATCACCAAAGTTTCTCCATGCCACAGTTTGAAATTTTTAATGGATTTAATACTATGCAGGCTCTGCCTTTGGAGAATGAACAACTGTTGATGAATCACGCTGAGAACTCCATCATGGAAGACATTTTTCAGTACCCAGAGCTTCTTGATGCTTTTGCACTCAGGATGCAAAATGCTTAG 1191 0.4534 MEEALRLLNGMAPIPEPDPQGSDQKKCTIANKRTLRDNGGGGVMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFNTAEEAACAYDRAARAMRGFKTRTNFVYPTSPPHPYSATEHHLFTTFNFPKHSQQPFNKTNTHNRHIPGSGAYWPSCSDQRNSSSPLDMLLYREFLNSSSCNPSLVSSAQFQDQFSYNKGSSSSFCSSYYSSLPTPSCLTGVKPCGDNGYSVSGSSSSSVNMSIDPCLIGADGTKINEPHDEGLEFFPREYSDSGLLEEIVHRFLPKSKTEICEKPPKVETFCNPESVSMPISDNMLVSNAQCGNETKRVLPKNKGFDGGSFDHQSFSMPQFEIFNGFNTMQALPLENEQLLMNHAENSIMEDIFQYPELLDAFALRMQNA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00804 396 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Rops1g00804 396 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Rops1g00804 396 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Rops1g00804 396 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Rops1g00804 396 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Rops1g00804 396 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Rops1g00804 396 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Rops1g00804 396 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 196 - -
Rops1g00804 396 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Rops1g00804 396 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00804 Rops-Chr1 19838965 19840155 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00804 43 293 AP2-EREBP Transcription Factor Family AT1G24590 38.645 3.95e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g00804 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00804 - - vum:124821082 343.199