Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00800 ATGGAGGAAGCACTGAGGCGTCTCAATGGTATGGCTCCGATTCCAGAACCCGACCAGCAAGGCTCCGACCAGAAAAAGTGTACCACCGCTAACAAGAGGACGTTAAGTGATAACGGCGGCGGTGGAGTCATGAAGTACCGCGGTGTTAGGCGCAGGCCGTGGGGTCGTTATGCTGCGGAAATAAGGGACCCACAATCGAAGGAACGACGGTGGCTTGGAACCTTCGACACGGCGGAAGAAGCCGCCTGTGCCTACGACCGCGCCGCCAGAGCCATGAGGGGTTTTAAGGCTCGAACCAATTTCGTTTACCCAACTTCACCTCCTCACCCTTATTCTGCAACAGAACACCACCTTTGCAATACCTTCAACTTCCCGAAACATTCTCAGCAACCTTTTAACAAGACCAACACTCATAACCGCCACATGCCAGGTTCTGGTGCTTGTTGGCCATCTTGTTCTGACCAGCAAAACTCTTCTTCTTCACTTGACATGCTTGTGTATCGTGAGTTTCTTAACTCTTCATCTTCTAACCCTTCTTTGGTTTCTTCTGCTCAGTTCCAAGACCAGTTTTCCTACAACAAGGGAAGTTCTTCTTCTTCTTGTTCTTCTTATTATTCGTCCTTGCCTACACCTTCTTGTCTCACAGGTTGCTGTTTGGTGAATCCATGTGGTGGTAATGGTTATAGTGTGAGTGGTTCTTCTTCTTCTTCTGTAAATATGAACATCGATCCTTGTCTTATTGGTGTTGATGGAACCAAATTCAATGAACCTCATGATGAAGGCTTGGAGTTTTTCCCGAGAGAGTATTCGGACTCTGGATTGTTGGAAGAGATGGTTCATAGGTTCTTGCCAAAATCAAAGACTGAGATATGCGAGAAACCACCAAAAGTTGAGACTTTCTGCAACCCTGAGTCAGTTTCTATGCCTATATCTAATAACATGCTTGTTTCCAACGCTCAATGTGGTAATGAAACGAAGAGGGTGCTTCCCAAGAACGAAGGTTTTGATGGTGGCTCTTTTGATCATCAAAGTTTCACCATGCCACAGTTTGAATCTTTTAATGGATTTAATACTATGCAGGCTATGCCTTTGGAGAATGAACAACTGTTGATGAATCACGCTGAGAACTCCATCATGGAAGACATTTTTCAGTACCCAGAGCTTCTTGATGCTTTTGCACTCAGGATGCAAAATGCTTAG 1200 0.4558 MEEALRRLNGMAPIPEPDQQGSDQKKCTTANKRTLSDNGGGGVMKYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDRAARAMRGFKARTNFVYPTSPPHPYSATEHHLCNTFNFPKHSQQPFNKTNTHNRHMPGSGACWPSCSDQQNSSSSLDMLVYREFLNSSSSNPSLVSSAQFQDQFSYNKGSSSSSCSSYYSSLPTPSCLTGCCLVNPCGGNGYSVSGSSSSSVNMNIDPCLIGVDGTKFNEPHDEGLEFFPREYSDSGLLEEMVHRFLPKSKTEICEKPPKVETFCNPESVSMPISNNMLVSNAQCGNETKRVLPKNEGFDGGSFDHQSFTMPQFESFNGFNTMQAMPLENEQLLMNHAENSIMEDIFQYPELLDAFALRMQNA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00800 399 MobiDBLite consensus disorder prediction 21 36 - -
Rops1g00800 399 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Rops1g00800 399 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Rops1g00800 399 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Rops1g00800 399 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Rops1g00800 399 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 205 - -
Rops1g00800 399 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Rops1g00800 399 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Rops1g00800 399 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Rops1g00800 399 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Rops1g00800 399 MobiDBLite consensus disorder prediction 1 46 - -
Rops1g00800 399 FunFam Ethylene-responsive transcription factor 2 45 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00800 Rops-Chr1 19735032 19736231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00800 1 110 AP2-EREBP Transcription Factor Family AT1G12980 53.719 2.84e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g00800 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00800 - - vum:124821082 371.318