Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00798 ATGGAGGAAGCACTGAGGCGTCTCAATGGTATGGCTCCGATTCCAGAACCCGACCCGCAAGGCACCGACCAGAAAAAGTGTGCCACCGCAAACAAGAGGACGTTACGAGATAACGGCGGCGGTGGAGTCATGAGGTACCGTGGCGTTAGGCGTAGGCCGTGGGGTCGTTATGCTGCGGAAATAAGGGACCCACAATCGAAGGAACGACGGTGGCTTGGAACCTTCGACACGGCGGAGGAAGCTGCCTGTGCTTACGACTGCGCCGCCAGAGCCATGAGGGGTTTAAAGGCTCGAACCAATTTCGTTTACCCAACTTCACCTCCTCACCCTTCTTCTGCAACACAACACCACCTTTTCACTACCTTTAACTTCCCCAAACATTCTTCTCAGCAACCTTTTAACAAGACTAACACTCATAACCGCCACGTGGCAGGTTCTGGTGCTTGTTGGCCATCTTGTTCTGACCAGCGGAACTCTTCTTCACTTGACATGCTTTTGTTTCGTGAGTTTCTTAACTCTTCATCTTCTAACCCTTCTTTGGTTTCTTCTGCTCAGTTCCTAGACCAGTTTTCCTACAACAAGGGAAGTTCTTCTTCTACTTCTTGTCCTCCTTATTCTTCGTCGTTGCCTACACCTTCTTGTTTCACAGGTTGCTGTTTGGTGAATTCATGTGGTGGTAATGGTTATCGTGAGTGTGGTTCTTCTTCTTCTGTTAACATGAACACCAATCCTTGTATTATTGGTGCTGATGGAACCAAAATCAATGAAACTCATGATGAAGGCTCGGAGTTTTTCCCGAGAGAGTCTTCGGACTCTGGATTGTTGGAAGAGATAGTTCATAGGTTCTTGCCAAAATCAAAGACTGAGAAATGCGAGAAACCACCAAAAGTTGAGACTTTCTGCAACCCTGAGTCCGTTTCTATGCCTATATCTGATAACATGCTTGTTTCCAACGCTCCATGTGGTAATGAAACGAAGAGGGTGCTTCCCAAGAACGAGGGTTTTGGTGGTGTCTCTTTTGATCACCAAAGTTTCACCATGCCGCAGTTTGAAACTTTTAATGGGTTTAATACCATGCAGTCTATGCCTCTTGGAAATGAACAACTCTTGATGAATCATGCAGAGAACTCCATGGAAGACATTTTTCAGTACCCAGAGCTTCTTAATGCTTTTGCACTCAGGATGCAAAATGCTTAA 1197 0.4637 MEEALRRLNGMAPIPEPDPQGTDQKKCATANKRTLRDNGGGGVMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHPSSATQHHLFTTFNFPKHSSQQPFNKTNTHNRHVAGSGACWPSCSDQRNSSSLDMLLFREFLNSSSSNPSLVSSAQFLDQFSYNKGSSSSTSCPPYSSSLPTPSCFTGCCLVNSCGGNGYRECGSSSSVNMNTNPCIIGADGTKINETHDEGSEFFPRESSDSGLLEEIVHRFLPKSKTEKCEKPPKVETFCNPESVSMPISDNMLVSNAPCGNETKRVLPKNEGFGGVSFDHQSFTMPQFETFNGFNTMQSMPLGNEQLLMNHAENSMEDIFQYPELLNAFALRMQNA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00798 398 Coils Coil 392 398 - -
Rops1g00798 398 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Rops1g00798 398 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Rops1g00798 398 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Rops1g00798 398 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Rops1g00798 398 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 194 - -
Rops1g00798 398 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Rops1g00798 398 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Rops1g00798 398 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Rops1g00798 398 MobiDBLite consensus disorder prediction 1 25 - -
Rops1g00798 398 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Rops1g00798 398 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00798 Rops-Chr1 19680232 19681428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00798 44 296 AP2-EREBP Transcription Factor Family AT1G24590 39.921 1.29e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g00798 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00798 - - vum:124821082 376.326