Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00792 ATGGAATTCGAAGATCAAGAGGAGCAAGAGGAAGAGCTATGTATGGCTGCAGCGAGTTATGACTCGTTGCCTAACTCGTCCAGAGTTAAGATTCCGGGTGGTGCCGAACCTATCATAGCTCAGCCTCTGAGAAATAACAACATCAACACCACCAACAACGGCGGTGCCGGCGCCACAAAATCTAGGTACAGAGAGTGTCTCAAGAACCACGCTGTCAACATCGGCGGCCACGCACTCGACGGTTGCGGTGAGTTCCTGCCGGCGGGAACAGAAGGCACACTCGACGCGCTAAAATGCGCCGCCTGTAGCTGCCACCGTAACTTCCACCGCAAAGAGACCGAAACCCCCGCCGGAGAATCGTATATGTTGACCCACCACCACCCTCCGCCGCCGCAGTTTGCGGCTTATTATCGGACTCCGGCGGGTTACTTGCATGTGGCGGGACAGCAGAGGACTCCGGGGACGCTGGCGCTGCCGTCGACCTCGGGCGCCGGTGCCGGAACTTGTGGGGAACAGAGCATGAGGGAGGATCAGGAAGATGTTTCGGACCCGAGTGCAGGAGGAGGAAGCTCGAAGAAGAGGTTCAGAACAAAGTTCACGCAGGAACAGAAGGATAAGATGCTTGAATTGGCTGAAAGATTGGGTTGGAGGATTCAGAAGCACGATGAAGCTGTGATTCAGAATTTCTGTAACGACACTGGGGTTAAACGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCATACTCTTGGTAAGAAGCCCTAG 768 0.5443 MEFEDQEEQEEELCMAAASYDSLPNSSRVKIPGGAEPIIAQPLRNNNINTTNNGGAGATKSRYRECLKNHAVNIGGHALDGCGEFLPAGTEGTLDALKCAACSCHRNFHRKETETPAGESYMLTHHHPPPPQFAAYYRTPAGYLHVAGQQRTPGTLALPSTSGAGAGTCGEQSMREDQEDVSDPSAGGGSSKKRFRTKFTQEQKDKMLELAERLGWRIQKHDEAVIQNFCNDTGVKRHVLKVWMHNNKHTLGKKP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00792 255 MobiDBLite consensus disorder prediction 153 197 - -
Rops1g00792 255 FunFam Zinc-finger homeodomain protein 2 179 253 - -
Rops1g00792 255 Gene3D - 177 253 - -
Rops1g00792 255 SUPERFAMILY Homeodomain-like 180 253 IPR009057 -
Rops1g00792 255 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Rops1g00792 255 NCBIfam homeobox domain, ZF-HD class 192 248 IPR006455 -
Rops1g00792 255 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Rops1g00792 255 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 251 - -
Rops1g00792 255 MobiDBLite consensus disorder prediction 153 168 - -
Rops1g00792 255 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00792 Rops-Chr1 19465434 19466836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00792 1 251 ZF-HD Transcription Factor Family AT4G24660 47.809 5.31e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops1g00792 ZF-HD_dimer 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00792 - - gmx:100808910 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00792 1 19465434 19466836 Rops1g00792 1 19465434 19466836 ECH
Rops1g00792 1 19465434 19466836 Rops2g02932 2 51819534 51820214 PCT