Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00790 ATGGCTGAGAGCTTAGACAGTGCCACCTCTAATCTTCTTTGTTCTGAGAACTGCGATACTTGTTTTGATGATGCAGAAGATGGTTCTGGAGTTTCACCTTCTTGGGACCACAGAAACCTTAACTCTGACCAACAGTGTTTGAGTTTGGACAACCTTGGATCGGAGTTCTTAACATGTTTTTTGATACAGAGTGAGGAAACTGTGAGGGTTATGGTTGAGAGGGAGAGGGAGCATTTGCCAAGGGATGATTACTTGAAGAGGCTGCGTAGTGGGGACTTGGACTTGAGTGTTAGGAGAGAGGCTCTTGATTGGATTTGGAAGGCTCATGCTTATTATGGTTTTGGACCCTTGAGCTTTTGTCTATCTGTGAACTACTTGGATCGCTTTCTATCAGTTTTTGAGTTACCGAGAGGTGTAAGTTGGACTGTGCAATTGTTAGCGGTAGCTTGCTTATCAATTGCAGCTAAAATGGAGGAGATTAATGTGCCCCAATCTGTAGATTTACAGGTTGGAGAGCCAAAGTTTGTATTCGAAGCAAAAACCATTCAAAGAATGGAACTACTGGTATTAAGCACATTGAGATGGAAAATGCAAGCTTTAACTCCTTGTTCCTTCATAGACTACTTCCTTGGTAAGATCACTTGTGAGAAGCATCAAGTAAAGTCATCAATTTCAAGATCAGTTCAGCTCATCCTTAGCATAATCAGAGGGATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCAGCAGTGGCGATTTCTGTTTTAAGGGAATTGCAAGGGAAAGAGATTCATAAGGCCATGACTGATTTCTTCATTGTAGAGAAGGAGAGAGTTCTAAAGTGTCTTGAACTGATCAGAGATTTATCCTTGATCAAGGCTTCTGCTAATTTTGGCAGTAAATCTACACCATTTGTGCCCCAAAGTCCTGTTGGGGTGTTAGATGCTGGATGCTTAAGTTCCAAGAGTGATGAATTAACAGTTGGGTCATGTCCAAATTCTTTTCATAATAGTCCAAATACTAAAAGGAGCAAATCAGATGGACCTTCTAATGGAACTTCTTCCAAGTCATGA 1077 0.4123 MAESLDSATSNLLCSENCDTCFDDAEDGSGVSPSWDHRNLNSDQQCLSLDNLGSEFLTCFLIQSEETVRVMVEREREHLPRDDYLKRLRSGDLDLSVRREALDWIWKAHAYYGFGPLSFCLSVNYLDRFLSVFELPRGVSWTVQLLAVACLSIAAKMEEINVPQSVDLQVGEPKFVFEAKTIQRMELLVLSTLRWKMQALTPCSFIDYFLGKITCEKHQVKSSISRSVQLILSIIRGIDFLEFRPSEIAAAVAISVLRELQGKEIHKAMTDFFIVEKERVLKCLELIRDLSLIKASANFGSKSTPFVPQSPVGVLDAGCLSSKSDELTVGSCPNSFHNSPNTKRSKSDGPSNGTSSKS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00790 358 CDD CYCLIN_AtCycD-like_rpt1 97 195 - -
Rops1g00790 358 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
Rops1g00790 358 MobiDBLite consensus disorder prediction 330 358 - -
Rops1g00790 358 Pfam Cyclin, C-terminal domain 201 293 IPR004367 -
Rops1g00790 358 PANTHER CYCLINS 64 288 IPR039361 -
Rops1g00790 358 Pfam Cyclin, N-terminal domain 68 197 IPR006671 -
Rops1g00790 358 Gene3D - 81 198 - -
Rops1g00790 358 SMART cyclin_7 103 191 IPR013763 -
Rops1g00790 358 FunFam D6-type cyclin 195 285 - -
Rops1g00790 358 CDD CYCLIN_AtCycD-like_rpt2 201 287 - -
Rops1g00790 358 SMART Cyclin_C_2 200 335 IPR004367 -
Rops1g00790 358 Gene3D - 71 286 - -
Rops1g00790 358 SUPERFAMILY Cyclin-like 59 197 IPR036915 -
Rops1g00790 358 FunFam D2/4-type cyclin 81 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00790 Rops-Chr1 19422300 19424891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00790 63 261 Core Cell Cycle Gene Families AT5G65420 64.677 1.19e-91 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00790 K18810 - gmx:100794010 512.686