Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00786 ATGATAAGAAGCAGCTTTCCTCGGCCATTCATCTCACAGACATACAAAAACAGTTTCTCAAAGCCAAGATCAAAGGAAGAGATCAAGTTACTGGCTGCTAAGAAACATAGTGAAGCAGAAAGGAGACGTAGAATAAGAATCAATGGTCAATATGACACCCTCCGTAGTATCCTCCCCAACTTAATCAAAAAGGACAAGGCAACAGTACTGGCTGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAAGTATCAAAACTTGAAGAAAATAGTGTTGGTAGCTCAAAGGAGGTCAAGTTTCCTAGTGGGGCAGACAAAGTGAATTTGGAAAAATGTAATGATGAGGAGGGTCTAGTGAAGGCCACATTGAGTTGTGAAGATAGGCCAGGACTGATATCATCTATAGCAAGGGCACTGGGGTCAGTGAAAGCCAAAGTGGTAAAGGCTGAGATGGTGACAGTGGGTGGAAGAACCAGAACTGTGTTGTGGGTGCAAGGTCCTGGAAATGAAGGTCTTGGGATCCTTAGGAGTACTTTGAAGGTTGTCATGCACAAGCCAACACTTAGGATGCGGCGGTTTACTCAATAA 588 0.4354 MIRSSFPRPFISQTYKNSFSKPRSKEEIKLLAAKKHSEAERRRRIRINGQYDTLRSILPNLIKKDKATVLAETIKQVKELKKKVSKLEENSVGSSKEVKFPSGADKVNLEKCNDEEGLVKATLSCEDRPGLISSIARALGSVKAKVVKAEMVTVGGRTRTVLWVQGPGNEGLGILRSTLKVVMHKPTLRMRRFTQ* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00786 195 Gene3D - 113 192 - -
Rops1g00786 195 Pfam Helix-loop-helix DNA-binding domain 35 80 IPR011598 GO:0046983
Rops1g00786 195 CDD ACT_UUR-ACR-like 122 172 - -
Rops1g00786 195 SUPERFAMILY ACT-like 120 187 IPR045865 -
Rops1g00786 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 89 IPR036638 GO:0046983
Rops1g00786 195 Coils Coil 70 97 - -
Rops1g00786 195 Pfam ACT domain 122 185 - -
Rops1g00786 195 PANTHER TRANSCRIPTION FACTOR BHLH30 18 186 IPR045847 GO:0003700|GO:0006355
Rops1g00786 195 SMART finulus 37 86 IPR011598 GO:0046983
Rops1g00786 195 Gene3D - 32 100 IPR036638 GO:0046983
Rops1g00786 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00786 Rops-Chr1 19370248 19371209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00786 30 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 42.754 2.96e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00786 ACT_6 5.4e-06 CL0070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00786 - - gmx:102667782 258.07