Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00780 ATGGCTCTTCCTGGTTCCCTGCAATTGTCCCATGGATTGGGACTTTGCAGGAACCTGAGCTGCAATAAACATCCGAGGGTAACAGGAAGAGGCAGGTTACATTTATTGAATGTAGGACCTTCATGTCCTGCTTCGTTCATGAAACAGGACTACCGGGGTTTTCATTACCTTCATCGTCTAAACAGGTCATCACATACATTGTCTTGCAAATCCCGCCCTTTTAAGTGCCATTGTTTTTTAATGCCAGGCCAACCAAATAAGCTTCCTGCTGTCAAGATTGCTGCTGCAGTGCTGGCAAGGTCCAGTAACGTGTTACAAAATAGTCCTATCATTATAAAGTTGATCCCTGCGGTTGGCATTATCATTTTTGCAGTATGGGGTGTTAGTCCATTAATGTTTCAGATAAGGAAACTGTTTTTTCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCATCATATAGTTACTTCTTACCTTCAGCCATTACTGTTGTGGACCGGAGCAATACTTATTTGCAGAGCACTGGAGCCAATAATTCTACCTACAGAAACTGGCCAGGTTGTTAAGGAACGGCTTTTGAATTTTGTGAGATCATTATCAACTGTACTGGCCTTTGCCTATTGTTTATCAAGTGTGATTCAACAAGCACAGAAATTTGTAGCAGAGAGTGCTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGTAGGAAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCTTTTCGTTGTTTATGGAATTGCTGGGCTTCTCTACCCAGAGGTGGGTTACTGCAGGAGGTCTTGGGACAGTTTTATTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAAGTTTCTGGAACTGTGGAGCATGTTGGCTGGTGGTCACCAACAATTATAAGAGGTGAAGATCGGGAAGCTGTTCACATTCCAAACCACAAATTTACAATGAATGTTGTGCGAAACCTCAGTCAAAAAACACATTGGAGAATCAAAACCCACCTAGCCATTAGTCATTTGGATGTAAATAAGATTAGTAACATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAATGTAAATCCTGATAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATTTGTGTGTTAAGGAAGCTATACTACTGGATCTTCTTAGAGTTATTGGCCATCACCGAGCCCGACTTGCAACACCGGTCCGTACCCTGCAGAAAATATACACTGATGCTGACTTGGAGAACATACCATATGCGGATTCTACATTTAGTGGTGCTGGAACAGTATCTAACCGTCCATTATTAATGATTGAACCACCTTACAAGATCAATGCAGATGATAAGATGAAAAGTCGATCAGCAAGAGCAGCTGTTGATCAAGATAACAAGACGCAAGCCAAACTTGATACTAAGACAGATGACAAGGTTGGACCAATAGGAGTACCAGATACCAAGGTTAGAGGAACTCAAGATGACTCTAAGGTGGATACCAAAGTTAATGCATCTAATTCTGATGCAACTGGAAAGTCCAAGACTAATGTGACTCCCAAACCTGATCCTGAAGTGGGTGAAAACAAGTCACCAAAATCAAATTCAAACAAGGCAAATGTGGAGGTGCCAGAAATGTCTTCTAACTCCAAAGTAAATAATTCAACCCAAAAGGACATTCAAGTCAAAGAATCCAAGGATAAGACCATTAAAAATATCAAGCCAAGCATTGACTCTGACAATGTAGTTTCCTCCTCATCAACTAACAATGCTGACAAAGCTGGTGAACTTTCTACAAATATGTCAACAAAACAGCAAGGAGAAAAGAAACCTGCTGCACAGCCTCATGCATCAAGGCCTGTTCTTGAAGAGAATATAGTACTTGGTGTTGCATTGGAGGGATCAAAGAGGACCCTTCCTATTGATGAGGAGATTGACACTGTGACTGCTCAAGAGGCAAAGGAAATGGCCGCATGTCAGGGTGGAAATGGATCTCCAAAAGCTGCAGATGGGAATGTCAAGTAA 2172 0.4125 MALPGSLQLSHGLGLCRNLSCNKHPRVTGRGRLHLLNVGPSCPASFMKQDYRGFHYLHRLNRSSHTLSCKSRPFKCHCFLMPGQPNKLPAVKIAAAVLARSSNVLQNSPIIIKLIPAVGIIIFAVWGVSPLMFQIRKLFFQRSDNSWKKSTTHHIVTSYLQPLLLWTGAILICRALEPIILPTETGQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQKFVAESADASETRNMGFQFVGKAVYSAVWIAAFSLFMELLGFSTQRWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKISNIVADMRKVLAKNPQVEQQRLHRRVFLDNVNPDNQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYTDADLENIPYADSTFSGAGTVSNRPLLMIEPPYKINADDKMKSRSARAAVDQDNKTQAKLDTKTDDKVGPIGVPDTKVRGTQDDSKVDTKVNASNSDATGKSKTNVTPKPDPEVGENKSPKSNSNKANVEVPEMSSNSKVNNSTQKDIQVKESKDKTIKNIKPSIDSDNVVSSSSTNNADKAGELSTNMSTKQQGEKKPAAQPHASRPVLEENIVLGVALEGSKRTLPIDEEIDTVTAQEAKEMAACQGGNGSPKAADGNVK* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00780 723 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 707 IPR045042 -
Rops1g00780 723 MobiDBLite consensus disorder prediction 548 567 - -
Rops1g00780 723 MobiDBLite consensus disorder prediction 499 671 - -
Rops1g00780 723 MobiDBLite consensus disorder prediction 499 533 - -
Rops1g00780 723 MobiDBLite consensus disorder prediction 578 608 - -
Rops1g00780 723 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Rops1g00780 723 MobiDBLite consensus disorder prediction 701 723 - -
Rops1g00780 723 MobiDBLite consensus disorder prediction 624 658 - -
Rops1g00780 723 MobiDBLite consensus disorder prediction 609 623 - -
Rops1g00780 723 Gene3D - 299 354 IPR023408 -
Rops1g00780 723 Gene3D - 195 297 - -
Rops1g00780 723 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00780 Rops-Chr1 19220320 19227712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00780 9 719 Mechanosensitive Ion Channel Family AT5G10490 55.927 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00780 K22047 - gmx:100789444 1141.72