Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00778 ATGGCCTCAAAAACCAAAAGCTCTACCATTCAGGTGGCTCTCGTAGTAGCTTTTCTCACAGCCAATGTTGTATTATCTGATGACACTGTGCAAATTCCCGCTGACAAGTCCCAATTGAACTCATGGTTCAATAACAATGTAGGGCCCTTAGGTCCAAGAAGGAGTAGCCTGGACTCTGCACTGGTGGCTGCAGAGGAAGGTGCTAAGGTTGTGAAGGTCATGCAAGATGGAAGTGGGGAATTCAAGACCATCACTGAGGCCATTAACAGCATACCTAGTGGGAACACTAAGCGTGTGATTGTGTTCATTGGTGGTGGAAATTATAATGAGAAAATCACAATTGAAAGGACAAAACCTTTTGTCACCTTGTACGGTGCACCTGGGAAGATGCCAAACTTGACCTATGAAGGCACTGCAAAAAAATTTGGCACTGTTGACAGCGCCACATTGATTGTTGAATCAGATTACTTTGTGGCTACTAACATCATGATCTCAAATTCTTCACCAAAACCTGATGGGACTCATGGAGGTCCAGCAGCTGCATTGAGAATTTCTGGTGACAAAGCAACATTTTATAATTGCAAGCTGTTAGGATTCCAAGACACAGTTTGTGATGATAGGAATAGGCATTTTTTCAAAGATTGCTTTATTCAAGGCACAGTGGATTTTGTTTTTGGAAGTGGGAAGTCATTATATTTGAATAATGAATTGAGAGTGCTTGGCAACAACCAAATGACAGTGATAGCGGCACATGCAAGAAAAAGTACATCTGAGGATAATTTCTACTCATTTGTGCATTGCGACATTACTGGAACTGGAACTGGCACGTTGTTAGGCAGAGCATGGTTTTCTCATTCAAAAGTGATCTTTGCATACACCACTATGAGCAGTGTTATCAATCCAGCAGGGTGGAGTGACAACCTGCACCCTGAATTTGCTAGCACCGTGTTCTTTGGAGAGTTCCAGAACAAGGGACCTGGTGCAGATCCCAAAGGGCGTGCCAAGTTGACAAAGCAACTAAGTGATGCGGAGGTCAAACCTTTCATAACACTTGGAATGATTGAAGGCTCCAAATGGCTACTTCCTCCTCCAACTCCCAAAGTATAA 1107 0.4318 MASKTKSSTIQVALVVAFLTANVVLSDDTVQIPADKSQLNSWFNNNVGPLGPRRSSLDSALVAAEEGAKVVKVMQDGSGEFKTITEAINSIPSGNTKRVIVFIGGGNYNEKITIERTKPFVTLYGAPGKMPNLTYEGTAKKFGTVDSATLIVESDYFVATNIMISNSSPKPDGTHGGPAAALRISGDKATFYNCKLLGFQDTVCDDRNRHFFKDCFIQGTVDFVFGSGKSLYLNNELRVLGNNQMTVIAAHARKSTSEDNFYSFVHCDITGTGTGTLLGRAWFSHSKVIFAYTTMSSVINPAGWSDNLHPEFASTVFFGEFQNKGPGADPKGRAKLTKQLSDAEVKPFITLGMIEGSKWLLPPPTPKV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00778 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 360 - -
Rops1g00778 368 SUPERFAMILY Pectin lyase-like 68 362 IPR011050 -
Rops1g00778 368 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Rops1g00778 368 Gene3D - 69 364 IPR012334 -
Rops1g00778 368 FunFam Pectinesterase 66 362 - -
Rops1g00778 368 Pfam Pectinesterase 71 355 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00778 Rops-Chr1 19188227 19190176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00778 9 364 Carbohydrate Esterase AT1G69940 54.902 2.45e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00778 K01051 - gmx:100786427 562.377