Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00772 ATGGATGCAAACCCAACAGAGAAAATCTATGTTGCTGTTGGTAATGATGCACAGGATGGATTTAAGACTTTGAATTGGGTTCTCAAGAAATGGAATTCTCATGCAATTTCCATTGTTATTCTCCATGTGACTCACAACATTTCCAAGGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGATGAGAAACTAGAAGTTCTCAAAAAAGAAGAGCAAGAGAAAATCAACAAGCTGTTTTCCAAGTATATTGCTTTTTGTGGCAAGGTGCCAGCAGAGATTCTTGAAGTTGAAAAATATGATGAACCAATGCAAAAGCGCATCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCTTGAAATCAAGGGGTGCCATTAGTGGATTGTTCTATGTTCATCAATACAAGCCTGCCTTTTGTGAATTGTTCATTATTTGTGCTGGGAAGCAAGTTTTCCTAAGGGGAAACAATGATGAGAAAATCATGGAGGATGATAATGGAGTCATGGTTGCAAGGATGAGAGATAAGGTAACTTTTAAAGATTGGTTAGACAAAATATTCAATGATAAAACCAATGATTCCCAAGATATAATTGCATCTCCTTCCTCAAACAATTTGGAGTCCCCTGTGGCACAAAATCAATGGGAGTTTTATCTTCAAGAAATTGAAAATTATTATCAAGAATTGCTATCTTCAAATTTGGAGGAAGGAAGCTTCGGCCAAGACAATGACGACTCACAGATTTGTCCAACTGACCCAGATGTCACTGAAAGGAACAATTCTAATATGAGTCCTGCAGAAAAAATGGAGATCCTAAAAAATAATCTGAAGGAAGCTCGCAAAACCATCCAATTGAAGAGGAAAGAAGCAAAGGACAACATAGAGAGACGTGCAAAAGCTGAATGGGCAATTTGTTTATGCAACAGCCGGGCTGAAGAAATTGAACATCGAATAAGGGAAGAGGTGAATGCAAGGGAAGAGCTAAAGAAGGAACTATATGCAGAGAAAGAACAAATACAGGAAATGAGAATGGAGGTAGAAGAGAAAAGGAGGAGGGTGAGTTCAGTGACAGAACTACAATCAGAGATGTCAAACAGGCTTCAAATTTCAACATTGGCAAAGACAAGAGCAGAGGCACAGTTAGAGAGAGCAGTGAGTGAGAGAAGGGAAATGGTGAGAGAAATAGAAGACTTGAGGAGACAAAGGGATGTGTTGAATAGAAGGATTGAGTTTTGCAAACAGAAAGATGCTATTGGAATGGCTGCAAGGTTGAGTGAAACTGGTTGCAGTTTTAGGGAGTATAAGGAGGAAGAGCTGAGGTTGGCCACTGATAATTTTTCGGAGAGTTTGAGGTTGAAATCTGGTGGGGATTGGACCAATGTGTACAGAGGAAGGTTCCACCATTCCACTGTTGCAATCAAGATGCTCTCTTCTCCTTTTCCTTCCTTGTCTCCTCAAGATTTTCAATCCAAGATGAGGCTTCTTGGTGATATTAGGCAACCTCATCTTGTTGCCATGGTGGGCTTTTGCTCTGAGCCCAAATGCATAGTTTTGGAATACATGTGCAATGGAAGCTTGCGAGACATGTTATTTTCAAGGAGAAGAAACCGGGCCTTACGGTGGCACGACCGAATACGAATAGCAACAGAAGTTTGCTCTGGCCTGGGCTATCTTAACGCAGCAAAGCCCAGACCCACATTTCATTGCCATTTAACCCCAGCCAACGTCCTCCTAGACCGCAATCTAGTTGCCAAGCTCACGGGCTTTGGGCTTCATGAGTGCCACGATGAGCAATGTAACGTTGAGTCAGATTTACGGGCCATAGGGGTTTTGTTGCTACAGCTTTTGACTGGAAGAAATTGGGCCGGGCTTGTTGAGGAGGCCATGACAGTGGATATGGATAGAGAGACTTTGGTTAATGTTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCGAAAGAGCTTGCGGGCCTGGCTATGAGGTGCATGTCCATGAAAAGCAGGCCCAACTCAGAATTGGACTTTGCAAGGGTCTTGAAGGAACTAAACAAGATAAGAAGAAAAGGTGATGAAATAGTTGCAAGGGAAGGGAGAAAGGTAATCATTGGTGGGTGTATAGAAAGAGAGGGCTCCAATGATGTGCCTAGTGTTTTTCTTTGTCCTATACTTCAGGAGGTGATGAAAAACCCACACGTGGCAGCAGATGGATTTTCATATGAGCTGGAAGCAATAGAACAGTGGTTGATGTCGGGGCATCATACATCACCCATGACAAATTTAAGGCTGAAGCACACTTTCCTTACCCCAAATCACACCCTTCGTTCCTTAATTGAGGACTGGCGGAGCAACATATCAGCTAAAGTTGCAAATTAA 2424 0.4204 MDANPTEKIYVAVGNDAQDGFKTLNWVLKKWNSHAISIVILHVTHNISKDYVYTPFGKLPARSVNDEKLEVLKKEEQEKINKLFSKYIAFCGKVPAEILEVEKYDEPMQKRIIDLIFGLGITKLVMGFSFMKPSLKSRGAISGLFYVHQYKPAFCELFIICAGKQVFLRGNNDEKIMEDDNGVMVARMRDKVTFKDWLDKIFNDKTNDSQDIIASPSSNNLESPVAQNQWEFYLQEIENYYQELLSSNLEEGSFGQDNDDSQICPTDPDVTERNNSNMSPAEKMEILKNNLKEARKTIQLKRKEAKDNIERRAKAEWAICLCNSRAEEIEHRIREEVNAREELKKELYAEKEQIQEMRMEVEEKRRRVSSVTELQSEMSNRLQISTLAKTRAEAQLERAVSERREMVREIEDLRRQRDVLNRRIEFCKQKDAIGMAARLSETGCSFREYKEEELRLATDNFSESLRLKSGGDWTNVYRGRFHHSTVAIKMLSSPFPSLSPQDFQSKMRLLGDIRQPHLVAMVGFCSEPKCIVLEYMCNGSLRDMLFSRRRNRALRWHDRIRIATEVCSGLGYLNAAKPRPTFHCHLTPANVLLDRNLVAKLTGFGLHECHDEQCNVESDLRAIGVLLLQLLTGRNWAGLVEEAMTVDMDRETLVNVLDDMAGQWPLDLAKELAGLAMRCMSMKSRPNSELDFARVLKELNKIRRKGDEIVAREGRKVIIGGCIEREGSNDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLMSGHHTSPMTNLRLKHTFLTPNHTLRSLIEDWRSNISAKVAN* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00772 807 Coils Coil 389 430 - -
Rops1g00772 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 806 IPR013083 -
Rops1g00772 807 Coils Coil 281 308 - -
Rops1g00772 807 SMART Ubox_2 734 797 IPR003613 GO:0004842|GO:0016567
Rops1g00772 807 Pfam U-box domain 731 799 IPR003613 GO:0004842|GO:0016567
Rops1g00772 807 SUPERFAMILY RING/U-box 728 802 - -
Rops1g00772 807 Gene3D Transferase(Phosphotransferase) domain 1 537 717 - -
Rops1g00772 807 ProSiteProfiles Protein kinase domain profile. 462 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00772 807 ProSiteProfiles U-box domain profile. 730 804 IPR003613 GO:0004842|GO:0016567
Rops1g00772 807 PANTHER OS02G0152300 PROTEIN 9 795 - -
Rops1g00772 807 CDD RING-Ubox_WDSUB1-like 732 787 - -
Rops1g00772 807 SUPERFAMILY Protein kinase-like (PK-like) 452 686 IPR011009 -
Rops1g00772 807 Coils Coil 326 374 - -
Rops1g00772 807 Gene3D Phosphorylase Kinase; domain 1 436 536 - -
Rops1g00772 807 Pfam Protein tyrosine and serine/threonine kinase 471 613 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00772 Rops-Chr1 19133985 19139637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00772 7 807 U-box Gene Family AT5G65500 49.630 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops1g00772 PK_Tyr_Ser-Thr 6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00772 - - gmx:100786771 1301.58