Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00771 ATGGCTCGTGCTACTACTACTTCTAGTAACTCTAACTGGTTATCGTTTTCGTTGTCACCAATGGAAATGTTCAGGTCCTCAGAACCACCACAGTTCGTTCAATACGACGCCGCTTCGGGAACTTCAAATCATCATCATTACTTCCTTGATAACTTGTATGCTAACGGGTGGGGGAATAACAAGTCTCAGGTGTTTTATGGTGCTCAAGCGGAGCAAAATATGAACAGGGAACAACAAGCACCATCTCTTTTTTTCATGGAATCGTCGCACGTGAACCACGCGCCGCCGCCGAAGTTGGAGGATTTTCTCGGCGATAGCCAAACGGAGACCCAAGACTCTTCTTCACTGACTCATATTTATGACCAACACCACCATGGCTCAGCTTACTTTGGTGACCACCAAGATCTTAAGGCCATTGCTGCTTTTCAAGCTTTCTCTACAAACTCAGGCTCCGAGGTTGATGACTCAGCCTCCATCGGAAAAGCTCAACCGGGTTGCACCAACGAGTTTGGGACTCACTCCATTGAGTCATCCGGGAACGAGTTAACCTTCTCCGCCGCTACAGCCGCCGCCACCACCACCGGAACTTTGTCTTTGGGTGTAGCACAGAGTTCCGATGAGACCCTCGTTGCTGCTGATTCCGATAGCTCTAAGAAGATAGCTGATACCTTTGGTCAGAGAACTTCAATTTACAGAGGTGTTACCAGACACAGATGGACGGGTAGATATGAAGCGCATCTATGGGACAACAGCTGTAGAAGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTTTATTTGGGTGGATATGACAAAGAAGAAAAGGCAGCAAGATCCTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAATTATACAAAGGAATTGGAAGAGATGAAACATGTAACCAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGCGGCTTTTCCAGAGGAGCTTCTATATATAGGGGTGTCACAAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGTGTTGCTGGAAACAAAGATCTGTACTTAGGAACATTCGCAACCGAAGAGGAAGCAGCAGAGGCATACGATATTGCAGCCATAAAGTTCAGAGGTGCAAACGCAGTAACCAATTTTGAGATGAATAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCTGTTGGTGGGGCAGCAAAACGCTTGAAACGTTCCCTAGAATCAGAACAGAAAGCTTCTCTTAGCAATACTCAGCAGAATCCACAGTGTGCTAATATGAGTAACAGCATCAATTTCTCAGCCATTCATCAACCAGTTGCTTCTATCCCTTATGGAATTCCATTTGATTCAACAACGGCATATTATCATCACAACCTCTTCCAACATCTTCATCCTACCAATGATGGCACTGCTGAGTCTGCAGTAACTTCCACCAATGCAACTGGACTGAATGCTCTTCCAGCATCAGCAGCTGAGTTCTTTTTATGGCCTCATCAGTCTTATTGA 1539 0.4594 MARATTTSSNSNWLSFSLSPMEMFRSSEPPQFVQYDAASGTSNHHHYFLDNLYANGWGNNKSQVFYGAQAEQNMNREQQAPSLFFMESSHVNHAPPPKLEDFLGDSQTETQDSSSLTHIYDQHHHGSAYFGDHQDLKAIAAFQAFSTNSGSEVDDSASIGKAQPGCTNEFGTHSIESSGNELTFSAATAAATTTGTLSLGVAQSSDETLVAADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKASLSNTQQNPQCANMSNSINFSAIHQPVASIPYGIPFDSTTAYYHHNLFQHLHPTNDGTAESAVTSTNATGLNALPASAAEFFLWPHQSY* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00771 512 CDD AP2 229 298 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 Gene3D AP2/ERF domain 230 298 IPR036955 GO:0003700|GO:0006355
Rops1g00771 512 Gene3D AP2/ERF domain 332 392 IPR036955 GO:0003700|GO:0006355
Rops1g00771 512 ProSiteProfiles AP2/ERF domain profile. 230 296 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 Pfam AP2 domain 230 288 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 Pfam AP2 domain 332 382 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 SUPERFAMILY DNA-binding domain 331 391 IPR016177 GO:0003677
Rops1g00771 512 MobiDBLite consensus disorder prediction 153 174 - -
Rops1g00771 512 SUPERFAMILY DNA-binding domain 229 298 IPR016177 GO:0003677
Rops1g00771 512 FunFam AP2-like ethylene-responsive transcription factor 331 392 - -
Rops1g00771 512 CDD AP2 331 390 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 SMART rav1_2 230 302 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 SMART rav1_2 332 396 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 FunFam AP2-like ethylene-responsive transcription factor ANT 229 298 - -
Rops1g00771 512 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 PRINTS Ethylene responsive element binding protein signature 372 392 IPR001471 GO:0003700|GO:0006355
Rops1g00771 512 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 433 - -
Rops1g00771 512 ProSiteProfiles AP2/ERF domain profile. 332 390 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00771 Rops-Chr1 19092550 19097287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00771 47 512 AP2-EREBP Transcription Factor Family AT5G10510 54.317 3.18e-164 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops1g00771 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00771 K09285 - gmx:100777168 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00771 1 19092550 19097287 Rops2g02909 2 51229401 51234479 PCT