Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00770 ATGGCGTCGAAGGATAACCATAGAAAAGAGTTTTCGAGCGATGAGGAGTTATCCCCGAGAGGGATATTGGAAGCCCCTGTTTCAGAAACAGAGTCTGACAATAGTATGAGCAGCAGTTCCGGCACCTGCTTGTCGGAGAATTCGCCGGCGATGGAGGCTCCGTCGGGAAAAGCAGTTGGTCGAGAAGGTCAAGTTCAGCAATGGAAATCTATGATTGACATTTTCAAGTTCAAGTCAGTTAGAAAATTAACAGCCATTCCTCTGCTTGCTGTGAACCATGATATCTCAAAGAAGAACATGACAAAAAAATTGGCTCGAATTCGAAGTGCTGAAGATAATATTGGTATTGGAGAATTTCATACGAAACCCTCTTGGAGGAACTTCGATTATCAAGAGCTTGCAGCTGCAACTAACGATTTCAGTTCTGAAAACTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGACGCTTACCTGATGGTCAAGTTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGAAGCTGCAGATAGAGCATGTGATTTCTTGACAGAACTTGGGATTATTGCACACATTAACCACCCAAATGCTACACGGCTTGTTGGGTTTGGCATTGATCGTGGCCACTACTTTGTCTTACAATTTGCTCCACATGGAAGCCTTTCTTCTTTGCTTTTTGGTTCTGAATGCTTGGATTGGAAGATAAGGTTCAAGGTAGCTATTGGGGTAGCAATGGGATTGCATTATCTCCATAAAGTTTGCCCAAGAAGAATCATTCACAGGGATATCAAAGCCTCCAATATATTACTCAATGAAAATTATGAAGCTGAGATTTCAGATTTTGGACTTGCAAAGTGGCTCCCAAATAATTGGGCCCAGCATGTTGTTTTCCCTATAGAAGGCACATTTGGTTATTTGGCTCCAGAGTACTTTATGCATGGTGTTGTAGATGAGAAGACTGATGTATTCGCATTTGGAGTTTTGCTATTGGAACTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGACAAAGTCTTGTGATCTTGGCCAAGCCACTACTGGACTCAAACAATGTCAAGGAATTAGCAGACCCCAGATTAGAAGAGAATTATGATCCAACTGAAATGAAGCGTGCCGTGGTGACAGCTTCCATGTGTGTCCATCATGCATCCTCCAAGCGGCCATTCATGAATCAGGTAGTGCAACTACTAAAGGGTGAAGAGGCAATTATAGAAGCAAAGCTAAATTCAGTTGCATCAAAATCTCCCTTGTTGGAGGCAATTGACCTAGAAGATTATACTAGCTCTAGTTACTTGAATGACCTCAACCGCCATAGGCAACTAATCATGGAGTGA 1365 0.4212 MASKDNHRKEFSSDEELSPRGILEAPVSETESDNSMSSSSGTCLSENSPAMEAPSGKAVGREGQVQQWKSMIDIFKFKSVRKLTAIPLLAVNHDISKKNMTKKLARIRSAEDNIGIGEFHTKPSWRNFDYQELAAATNDFSSENLVGKGGHAEVYKGRLPDGQVIAVKRLMKNEKEAADRACDFLTELGIIAHINHPNATRLVGFGIDRGHYFVLQFAPHGSLSSLLFGSECLDWKIRFKVAIGVAMGLHYLHKVCPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNNWAQHVVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRRAVDSNSRQSLVILAKPLLDSNNVKELADPRLEENYDPTEMKRAVVTASMCVHHASSKRPFMNQVVQLLKGEEAIIEAKLNSVASKSPLLEAIDLEDYTSSSYLNDLNRHRQLIME* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00770 454 SUPERFAMILY Protein kinase-like (PK-like) 124 409 IPR011009 -
Rops1g00770 454 SMART serkin_6 140 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00770 454 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 219 421 - -
Rops1g00770 454 MobiDBLite consensus disorder prediction 28 49 - -
Rops1g00770 454 ProSiteProfiles Protein kinase domain profile. 140 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00770 454 Gene3D Transferase(Phosphotransferase) domain 1 219 424 - -
Rops1g00770 454 Gene3D Phosphorylase Kinase; domain 1 97 216 - -
Rops1g00770 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Rops1g00770 454 PANTHER OS08G0249100 PROTEIN 10 421 IPR046958 -
Rops1g00770 454 MobiDBLite consensus disorder prediction 1 62 - -
Rops1g00770 454 MobiDBLite consensus disorder prediction 1 17 - -
Rops1g00770 454 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 115 217 - -
Rops1g00770 454 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
Rops1g00770 454 Pfam Protein kinase domain 142 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00770 Rops-Chr1 19085582 19090671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00770 106 451 Trihelix Transcription Factor Family AT1G70460 40.616 4.40e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops1g00770 Pkinase 4.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00770 - - gmx:100818314 724.931