Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00751 ATGTTTCTTTCTCAGGCCCTCGGTTCTGTCGCATTGCCCGTCAAACTGAGGCCTTTCAAGGTTGTTTCTGAAGGGTTCCCTTCTTTTCTTCCAAGGGAAGTTGAGAGAATTCAAGACCCTTTTGCTCGAAAACTCGCCATGCGGATTCAGAGATTACCCGTACCTGTTAGGTTCTCAGAAAATCCCATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAGCAAGGAACCTCCAGTTGTTCTTCTACATAGTTTTGACAGTTCATGTTTAGAATGGAGATATGGTTATCCATTGCTTGAAGGATCCGGTTTAGAGACTTGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAAACTTCCACCTTGTGATGTAGTCTCAAAGCGTGAACACTTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCAATGATATTGGTTGGACCAAGCCTTGGCTCTGCTGTTGCCATTGACTTTGCAGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATGCGAAGGGAACCGGAAACCTAGCAACCTTACCTAGAGCAGTAGCCTATGCCGGGGTAAATTTATTGAAGAGCATTCCATTACGCTTATGTGTCACCTATTTGAACTACACTAATACATCCTTCCGCACCAGTCTTGATTGGACCAATGTGGGCCGCTTGCATTGTTTAATGCCTTGGTGGGATGATGCTACTGTGGATTTTATGACTAGTGGCGGTTACAACGTTTCTTCCCTGATAAGAAAGGTATATGCTGCATTACAGGTAAAGCAGAAAACATTGATAATATGGGGTGAAAATGACCGCATCATCAGCAATAAATTTGCAGTGCAATTACACTGTGAATTACCTGATGCAAAATTACGCCAAATACCCAATTGTGGGCATCTTCCTCATTTGGAAAAACCAGATTCTACTATCAAATTAATTGTTGAATTTGTGCAAAGCGACGCCAAGAAATCAAATGAATGTGTTTCACAAGTATGA 1023 0.4223 MFLSQALGSVALPVKLRPFKVVSEGFPSFLPREVERIQDPFARKLAMRIQRLPVPVRFSENPIMSSCVKPLVQSKEPPVVLLHSFDSSCLEWRYGYPLLEGSGLETWAIDILGWGFSDLEKLPPCDVVSKREHFYQFWKSYIRRPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIDASVYAKGTGNLATLPRAVAYAGVNLLKSIPLRLCVTYLNYTNTSFRTSLDWTNVGRLHCLMPWWDDATVDFMTSGGYNVSSLIRKVYAALQVKQKTLIIWGENDRIISNKFAVQLHCELPDAKLRQIPNCGHLPHLEKPDSTIKLIVEFVQSDAKKSNECVSQV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00751 340 SUPERFAMILY alpha/beta-Hydrolases 75 327 IPR029058 -
Rops1g00751 340 PRINTS Alpha/beta hydrolase fold signature 103 118 IPR000073 -
Rops1g00751 340 PRINTS Alpha/beta hydrolase fold signature 162 175 IPR000073 -
Rops1g00751 340 PRINTS Alpha/beta hydrolase fold signature 272 286 IPR000073 -
Rops1g00751 340 PRINTS Alpha/beta hydrolase fold signature 148 161 IPR000073 -
Rops1g00751 340 PRINTS Epoxide hydrolase signature 103 118 IPR000639 GO:0003824
Rops1g00751 340 PRINTS Epoxide hydrolase signature 303 325 IPR000639 GO:0003824
Rops1g00751 340 PRINTS Epoxide hydrolase signature 162 175 IPR000639 GO:0003824
Rops1g00751 340 PRINTS Epoxide hydrolase signature 83 101 IPR000639 GO:0003824
Rops1g00751 340 Gene3D alpha/beta hydrolase 69 335 IPR029058 -
Rops1g00751 340 PANTHER HYDROLASE 25 331 - -
Rops1g00751 340 Pfam Alpha/beta hydrolase family 79 318 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00751 Rops-Chr1 18766345 18771731 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00751 78 326 Acyl Lipid Metabolism Gene Families AT3G10840 23.248 3.60e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00751 - - gmx:100792060 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00751 1 18766345 18771731 Rops1g00751 1 18766345 18771731 ECH