Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00745 ATGGGGATTCTGAGAAATGATGCAAAAGAAGAAGACAAAATGATAATCGGAAGGGAGAATGATAGCTCACAAGCCACACGAACTCGTGCTTTTCAAAGGCAGCTTCAACAACTCTTCCGCTTGCATGATTCAGGTCTAGACCAAGCTCTAATATATGCTCTACCTGTTTTCCACTACCAGGATTTGATGGGTTTGAAGGAACCGTTTGATTGTGCTGTGTGTCTATGTGAATTTTCAGACCATGACAAGCTGAGGTTGCTTCCCATGTGTAGCCATGCCTTTCACATGAATTGCCTTGACACATGGCTTCTATCAAATTCTACATGTCCTCTCTATAGAGCAACTCTCACCAGCTCATATTTCCCTGTGGAGAATCCAATATTTAATATTGACAATCCCTTGGTTCTGCCAAATGGGTTCAGAGTCATGAGTGAGGAAGAGAAGGGGTGTTCTTCAGATAGTCAAAGACTAGAAGAGCAAATTAGTGAGAAAAGGGTGTTTTCTGTGAGACTTGGAAAATTTAGAAATAGTGAATTGGAGGGTAGAGAAGTGGTAGAGGATAGTAGTTGTAGTTTGGATGCGAGGAGATGCTACTCCATGGGTTCATATCAGTACGTGGTTCGTGACTCAGATTTGCAAGTGCTCTTATCTCAATCTAATGACTCAGGAATAATGTTGTTGCAAAAGAGAGAATTGAAGCAATGTGTAGGCAAAAAAATATTGAGTCGAATGCCTTCTCCAGCGAGATTCCTAGCACTGTTGTCAACCTTTTTAAGCTTCAGCTCATCAACCTGTCTTACAATAAGCTTTTCGGCAAGTTCTTCAAAGTAA 831 0.4116 MGILRNDAKEEDKMIIGRENDSSQATRTRAFQRQLQQLFRLHDSGLDQALIYALPVFHYQDLMGLKEPFDCAVCLCEFSDHDKLRLLPMCSHAFHMNCLDTWLLSNSTCPLYRATLTSSYFPVENPIFNIDNPLVLPNGFRVMSEEEKGCSSDSQRLEEQISEKRVFSVRLGKFRNSELEGREVVEDSSCSLDARRCYSMGSYQYVVRDSDLQVLLSQSNDSGIMLLQKRELKQCVGKKILSRMPSPARFLALLSTFLSFSSSTCLTISFSASSSK* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00745 276 FunFam E3 ubiquitin-protein ligase ATL6 34 119 - -
Rops1g00745 276 CDD RING-H2_EL5-like 70 113 - -
Rops1g00745 276 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Rops1g00745 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 120 IPR013083 -
Rops1g00745 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 220 - -
Rops1g00745 276 SUPERFAMILY RING/U-box 52 117 - -
Rops1g00745 276 Pfam Ring finger domain 70 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00745 Rops-Chr1 18702663 18703994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00745 30 223 C3H Transcription Factor Family AT2G18650 43.478 2.16e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00745 - - ccaj:109807149 264.233