Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00725 ATGGCAGCAATTCCATTAGGGTTGCAGCAACGTGATGTTATTGGAGTCGCCAAAACCGGTTCTAGAAAAACCGCTACTTTTGTTCTTCCCACGTTGAGTTACATCACCAGGCTTCCTCGCATCAGTGGGGAGAATAAAGCTGAAGGTCCTTATGCCGTTGTCATGGCACCAACTCGTGGGCTTGCTCAGCATATGAGGAAGGTTATGGGAGCACTTCGAGATCATCTAGGTGTGAAGTTAATATTGGAGTCTAAGAGGTTGAGTATGTTGGCACAGAGTTGGGATAACTCTGAGTCTACCTAG 303 0.4686 MAAIPLGLQQRDVIGVAKTGSRKTATFVLPTLSYITRLPRISGENKAEGPYAVVMAPTRGLAQHMRKVMGALRDHLGVKLILESKRLSMLAQSWDNSEST* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00725 100 PANTHER RNA HELICASE 2 83 - -
Rops1g00725 100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 90 IPR027417 -
Rops1g00725 100 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 4 100 IPR014001 -
Rops1g00725 100 Pfam DEAD/DEAH box helicase 2 83 IPR011545 GO:0003676|GO:0005524
Rops1g00725 100 Gene3D - 1 98 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00725 Rops-Chr1 18314056 18320109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00725 5 80 Eukaryotic Initiation Factors Gene Family AT3G13920 41.176 2.34e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00725 K12858 - qsu:112021737 113.62