Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00716 ATGGCGATGATGCAAGGGGTTCAGAAGAACACGCTCTATGTGGGAGGGTTAGCGGAGGAAGTGAGCGAGTCTATTCTTCACGCTGCGTTCATACCCTTCGGTGACATCAAAGACGTGAAAACGCCGTTAGATCAGGCCACTCAGAAACACCGTTCCTTCGGTTTCGTCACTTTCCTCGAGAGAGAGGATGCCTCCGCCGCCATGGACAACATGGACGGCGCCGAACTCTATGGTCGTGTCTTAACCGTCAATTACGCACTCCCTGAACGTATTAAGGGTGGTGAACAAGGCTGGGCTGCTCAACCAATTTGGGCGGATGCCGATACTTGGTTTGAGCGGCAGCAGCAAGAGGAGGAAATGCGTCGGCTCGAAGCAGAGAATCGAGCTGCAATGCAGGCTGCAGAAGACTTGCACAGGAAACAAGTAGCCGAAGAGCGAGAAGGAGAGAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCAGAGGCTGAAGCAGAGGTTCTTCAACAAAATAACTATTAA 525 0.5143 MAMMQGVQKNTLYVGGLAEEVSESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLEAENRAAMQAAEDLHRKQVAEEREGEKEEEIEIKDDPMAEAEAEVLQQNNY* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00716 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Rops1g00716 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Rops1g00716 174 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Rops1g00716 174 PANTHER ATPASE E1 2 173 - -
Rops1g00716 174 MobiDBLite consensus disorder prediction 131 161 - -
Rops1g00716 174 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Rops1g00716 174 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Rops1g00716 174 SMART rrm1_1 11 84 IPR000504 GO:0003723
Rops1g00716 174 Coils Coil 113 140 - -
Rops1g00716 174 Gene3D - 3 150 IPR012677 -
Rops1g00716 174 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00716 Rops-Chr1 18231200 18233211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00716 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.35e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00716 - - ccaj:109797476 308.531