Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00709 ATGCTGAGCTCGAGGCAATCCTTCTTCATCTCTTCTTCTCCTTCTCCTTCTTCTTCATTGTTTTGTATCATTCTCTTTCAAGCTACTCTTCTTTATGGCCTTGCCTTTTCTGCTAACCATGAAGCCTCAACTCTCTTCTCTTGGCTCCATAGTTCTACATCACCACCCCCTCATTCTTTCTCTAACTGGAACATCCTTGATACCAATCCATGCAACTGGACTTGCATAACATGCTCCTCATTAGGCTTTGTCACTGAAATCAACATTCAATCAATTCCTCTTGAGCTTCCTGTACCTTCCAATCTCTCTTCATTTCCCTTTCTTCAAAAGCTTGTCATTTCTGATGCCAATCTCACTGGAACCATCCCTGTTGACATTGGTGATTGTTCTTCGCTCACTGTTCTTGACCTTAGCTCCAACAACCTTGTTGGCTCTATTCCTGCAAGTATTGGCAACCTCCAGAAACTGGAGAACTTGTCTTTGAACTCCAACCAGCTTACTGGGAAAATCCCAGATGAGATAGGCAACTGCATTGGCCTAAAAAATCTTCTCCTTTTTGATAATCAGCTTGGTGGGACCATCCCACCTGTGTTAGGAAAGTTGTCAAAACTTGAGTCCATCAGAGCAGGAGGAAACAAAGATATAGTTGGGAAGATCCCTGAAGAGCTTGGAGAATGCAGCAACTTGACAGTGTTGGGCCTGGCTGATACCAGAATATCTGGTTCCTTGCCTTCTTCTTTGGGTAGGCTTAGCAAGCTTCAAACTTTGTCCATCTATACTACTATGTTATCTGGTGAAATTCCACCAGAGTTAGGTAACTGTTCTGAACTTGTTGACTTGTTCCTATATGAAAATAGCCTATCAGGGTCTATTCCATCTGAGCTTGGTAAGCTCAAGAAGCTGCAACAGTTGTTTCTATGGCAGAATAGTCTTGTGGGGGATATCCCAGAAGAGATTGGTAATTGTTCAAGCTTGATAAACATTGATCTCTCTTTGAATTCTCTATCTGGAACTATACCTTTGTCTTTGGGGGGTCTTTTAGAACTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCAATACCTTCAAGTCTTTCAAATGCTAAGAAGCTTCAACAATTGCAAGTTGACACAAATCAGCTCTCAGGCTTGATTCCACCAGAGCTTGGGCAGTTGTCAAATCTTTTAGTGTTCTTTGCTTGGCAGAACCAACTTGAAGGAAGCATTCCTTCCACTTTGGGAAACTGTAGTAAATTACAAGCACTTGACTTGTCTAGGAATGCACTCACTGGTAGCATTCCTGCTGGCCTATTTAAGCTTCAAAACCTCACAAAACTGCTTCTCATTTCCAATGACATATCAGGTTCTATACCATCAGAAATAGGGAGTTGCAGCTCTCTTATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGCAGCATTCCTAAGACAATAGGAAGCCTCAAGAGCTTGAATTTTTTAGATCTCTCCAGGAACCGCCTCTCCGGGCCAGTGCCTGATGAGATTAGAACCTGCACAGAACTGCAAATGATAGACTTCAGCAACAACAACTTAGAAGGCCCTTTGCCTAATTCTTTGTCATCACTATCTGCACTTCAGGTATTGGATGCATCTTCTAACAAGTTTTCAGGTCCTATACCAGCAAGTTTGGGCCGTCTTGTTTCTCTTAGTAAGTTAATCATTGGCAATAACTTACTTTCTGGACCAATTCCATCATCACTGAGCCTATGTTCAAATCTTCAATTGCTTGATCTTAGTAGTAATCAGCTCACTGGAAGCATACCGGCCGAGCTCGGTCGTATTGAGACTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTCAGTGGAACAATCCCAGCTCAGATATCTTCTCTTAACAAGCTTTCCATACTGGACCTTTCACATAACCAGTTGGAAGGAGATTTGCAACCTCTAGCAGAGTTAGATAACCTTGTCTCTCTCAATGTTTCTTACAATAAATTCACTGGCTATCTTCCAGATAACAAGCTTTTCAGACAGTTATCATCAAAAGATCTCACTGGAAATCAAGGCCTTTGCACTTCAGGTCAGGATTCATGCTTTGTAAAGGATTCTGGCAAGACTGGTATGGAATTGAATGGAAATGAGGTAAGGAAGTCGCGAAGGCTTAAGCTAGCCATTGGATTGTTGATAGCCTTAACAATAATAATGATAGTTATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAGAGATGATGATTCAGAATTAGGGGACTCATGGCCATGGCAAATCATACCATTCCAGAAGCTGAATTTTTCAGTGGATCAAGTACTGAGATGTTTGGTTGATAGAAATATAATTGGTAAGGGATGTTCTGGTGTTGTTTATCGAGCTGAAATGGATAATGGTGATGTCATTGCTGTGAAGAAATTGTGGCCGACAACAACTGATGCAGGAGAGGCATTTAAGGATGATAAAACTGGAGTTCGCGATTCATTCTCAGCTGAGGTGAAGACTCTTGGCTCAATCCGTCATAAGAACATTGTCAGGTTCTTGGGATGTTGTTGGAACAAGAAAACAAGATTGCTTATTTTTGACTATATGCCAAATGGAAGTTTAAGCAGTATACTTCATGAGAGGACTGGAAATTCTCTGGAATGGGAACTTAGGTACAGAATCTTATTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGATTGTGTCCCTCCAATAGTCCACAGAGATATTAAAGCCAATAACATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCCAAGCTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTACATGATGAAGATCACAGAGAAGAGTGATGTTTATAGCTATGGTATAGTTTTGTTAGAAGTTTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAGGGGTCTCGAAGTACTTGACCCTAGCTTACTCTCAAGACCAGAATCAGAAACAGAGGAAATGATGCAAGCATTGGGAATAGCCTTATTGTGTGTCAATTCATCCCCTGATGAAAGGCCAACAATGAGAGATATAGCTGCAATGCTCAAGGAGATAAGGCATGAAAGGGAGGAATATGCAAAATTTGATGTGCTTCTAAAAGGGTCTCCTGCAAATGATGTGAATGGGAATAAAAGCTCTGGTGGTGTTCTTGCAACATCTTCATCAATATCTGTCATGCAAAATTTGAACACGAAAAGCAACAACACAAGCTTCTCTGTGTCTTCACTGCTTCATTCATCTTCAAGTGGCAAGCTGGGTTTCAAATGA 3417 0.4103 MLSSRQSFFISSSPSPSSSLFCIILFQATLLYGLAFSANHEASTLFSWLHSSTSPPPHSFSNWNILDTNPCNWTCITCSSLGFVTEINIQSIPLELPVPSNLSSFPFLQKLVISDANLTGTIPVDIGDCSSLTVLDLSSNNLVGSIPASIGNLQKLENLSLNSNQLTGKIPDEIGNCIGLKNLLLFDNQLGGTIPPVLGKLSKLESIRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPSSLGRLSKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGKLKKLQQLFLWQNSLVGDIPEEIGNCSSLINIDLSLNSLSGTIPLSLGGLLELEEFMISDNNVSGSIPSSLSNAKKLQQLQVDTNQLSGLIPPELGQLSNLLVFFAWQNQLEGSIPSTLGNCSKLQALDLSRNALTGSIPAGLFKLQNLTKLLLISNDISGSIPSEIGSCSSLIRLRLGNNRITGSIPKTIGSLKSLNFLDLSRNRLSGPVPDEIRTCTELQMIDFSNNNLEGPLPNSLSSLSALQVLDASSNKFSGPIPASLGRLVSLSKLIIGNNLLSGPIPSSLSLCSNLQLLDLSSNQLTGSIPAELGRIETLEIALNLSCNSLSGTIPAQISSLNKLSILDLSHNQLEGDLQPLAELDNLVSLNVSYNKFTGYLPDNKLFRQLSSKDLTGNQGLCTSGQDSCFVKDSGKTGMELNGNEVRKSRRLKLAIGLLIALTIIMIVMGITAVIKARRTIRDDDSELGDSWPWQIIPFQKLNFSVDQVLRCLVDRNIIGKGCSGVVYRAEMDNGDVIAVKKLWPTTTDAGEAFKDDKTGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSILHERTGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGIVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPSLLSRPESETEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIRHEREEYAKFDVLLKGSPANDVNGNKSSGGVLATSSSISVMQNLNTKSNNTSFSVSSLLHSSSSGKLGFK* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00709 1138 SUPERFAMILY RNI-like 111 503 - -
Rops1g00709 1138 PRINTS Leucine-rich repeat signature 635 648 - -
Rops1g00709 1138 PRINTS Leucine-rich repeat signature 589 602 - -
Rops1g00709 1138 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 770 873 - -
Rops1g00709 1138 SUPERFAMILY Protein kinase-like (PK-like) 768 1065 IPR011009 -
Rops1g00709 1138 Pfam Leucine rich repeat N-terminal domain 38 79 IPR013210 -
Rops1g00709 1138 FunFam Putative LRR receptor-like serine/threonine-protein kinase 616 701 - -
Rops1g00709 1138 Gene3D Ribonuclease Inhibitor 153 246 IPR032675 -
Rops1g00709 1138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 329 1065 - -
Rops1g00709 1138 SMART LRR_typ_2 298 322 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 538 562 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 658 683 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 153 177 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 635 654 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 586 610 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 490 514 IPR003591 -
Rops1g00709 1138 SMART LRR_typ_2 418 442 IPR003591 -
Rops1g00709 1138 FunFam LRR receptor-like serine/threonine-protein kinase 536 611 - -
Rops1g00709 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Rops1g00709 1138 Pfam Protein tyrosine and serine/threonine kinase 791 1064 IPR001245 GO:0004672|GO:0006468
Rops1g00709 1138 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Rops1g00709 1138 Gene3D Ribonuclease Inhibitor 40 152 IPR032675 -
Rops1g00709 1138 SUPERFAMILY RNI-like 363 693 - -
Rops1g00709 1138 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 38 197 - -
Rops1g00709 1138 Gene3D Transferase(Phosphotransferase) domain 1 874 1083 - -
Rops1g00709 1138 ProSiteProfiles Protein kinase domain profile. 787 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00709 1138 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 874 1083 - -
Rops1g00709 1138 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515
Rops1g00709 1138 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 213 436 - -
Rops1g00709 1138 Gene3D Ribonuclease Inhibitor 418 706 IPR032675 -
Rops1g00709 1138 Gene3D Ribonuclease Inhibitor 249 417 IPR032675 -
Rops1g00709 1138 Gene3D Phosphorylase Kinase; domain 1 773 873 - -
Rops1g00709 1138 SMART serkin_6 787 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00709 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 437 531 - -
Rops1g00709 1138 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00709 Rops-Chr1 18049297 18053240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00709 36 1084 Receptor kinase-like Gene Family AT5G56040 48.402 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops1g00709 PK_Tyr_Ser-Thr 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00709 - - gmx:100818541 1824.68