Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00705 ATGAACCACGAGGACAAAATCACCATGGACCTTGTTCCACCATCTGAACACCTCTGCTATGTTCGTTGCAACTTCTGTAACACTGTGCTTGCGGTTGGTATCCCATGCAAGAGGCTGCTAGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCATTCCTCAGCACCAAACCCCCAAATTCTCAAAATCAAACCATTGATCACACCCTGAGTCTCCAGGGGTTTTATGGTGATGCCAAAAAGGGTCAAGCATCATCTTCATCTTCCTCACCAACTACATCTAACGAGTCAGTGTCACCAAAAGCAGCACCTTTTGTTGTTAAACCACCTGAGAAGAAGCATCGTCTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAACAGCCAACCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCAAAAAATTGTGATGGACTTTATGCCAGCATGTAG 483 0.4596 MNHEDKITMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTKPPNSQNQTIDHTLSLQGFYGDAKKGQASSSSSSPTTSNESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKTANPQIPHREAFSAAAKNCDGLYASM* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00705 160 PANTHER PROTEIN YABBY 6-RELATED 14 153 IPR006780 GO:0007275
Rops1g00705 160 CDD HMG-box_SF 117 151 - -
Rops1g00705 160 MobiDBLite consensus disorder prediction 82 102 - -
Rops1g00705 160 MobiDBLite consensus disorder prediction 80 115 - -
Rops1g00705 160 Pfam YABBY protein 14 152 IPR006780 GO:0007275
Rops1g00705 160 SUPERFAMILY HMG-box 101 151 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00705 Rops-Chr1 17906375 17908058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00705 1 152 C2C2-YABBY Transcription Factor Family AT1G69180 64.744 4.97e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops1g00705 YABBY 6.5e-52 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00705 K25796 - gmx:100819079 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00705 1 17906375 17908058 Rops1g00705 1 17906375 17908058 ECH