Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00702 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGTTTTTATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAACGCTCATGTAGCTTTGAGAGAGATGAATTTAATTCAGACAAAGAAGTAGTTAAGAGCATGGAATTTGTGAACTTGGGATTTCCTGACTTGTTGGAAAAGTCTTTTCATGGTAGCCAACCTTTGGAGACATCAAGCTGTGATGTGGAAAGTAATTCTGGTAAAAGAGGGAATTCCTTCACCCATGTTATTGCTTTGGATTCATCTTTTGGGGAAGAAGAATCAGATTCAAAGCATTTAAGTTCTCTAATTGAATCCAAAACTCATGATTCCTCACTGATTGATTTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAAATGCAAAAGAAAGCTTCACTTTAACATCTATACATCCAACCACGCTTACTAAGAGAGCTCGCACTTCCAGCTTACCTGCTCAAGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTTCACACCAAGACTGCTAAAGTTATTGTTAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGTAAGCGAAGTTGTCGCAGGCGTCTAGCCGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTGATAAACAGCACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTGGGGTCTTCATTACAGAACAGACCCCAGTTTGCCTTTCAAGATGTATTTCAAAGTGGCATCTTTTTCCCAGGAAAGCATGATCAAATCTATCAGAGTGGACATATCAAATTGGAAGAGGATTCAATTTGCAGTTCTCAACTAGCAGCACCTATCACACTTGGTCAGGAGTTATCCAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGAATCCTTCACGCTTCTCACCACGAAATCCATTAGCTAGTTCCCTTGTCTTTCAGATGAATGACAGAGATGACCAAGTTTCTGACACCCCTTTGAGGATAAGCTCTATGGATAAATATGTACCAAATGAGTCCTTCCCATGTGGGATAAACTCTAATAAGGAAGTTATCAAGAATAGATCCACAACACTTTCTGATGCTGGTCATGCTCTTCAAGTCCACAGAGATGATATTTGCCAACCATCAGAATCATTCAATGCCACTGTTGATCTGTTTCAATTGTCTTCTCATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAAGACTGTTGTTTCCCAACTGTGTAA 1407 0.3987 MESWSYVPEEKGYLFSDEMDFSLDVFMRSRKALVEWDNKRSCSFERDEFNSDKEVVKSMEFVNLGFPDLLEKSFHGSQPLETSSCDVESNSGKRGNSFTHVIALDSSFGEEESDSKHLSSLIESKTHDSSLIDLKLGRLADCKGASSDKNAKESFTLTSIHPTTLTKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHTKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTDKQHKILQSYQGTKYLGSSLQNRPQFAFQDVFQSGIFFPGKHDQIYQSGHIKLEEDSICSSQLAAPITLGQELSSCALSLLSDQSQNPSRFSPRNPLASSLVFQMNDRDDQVSDTPLRISSMDKYVPNESFPCGINSNKEVIKNRSTTLSDAGHALQVHRDDICQPSESFNATVDLFQLSSHLQRVEQQRNSVLVKWENEDCCFPTV* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00702 468 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Rops1g00702 468 Pfam SBP domain 181 254 IPR004333 GO:0003677
Rops1g00702 468 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 118 376 IPR044817 GO:0003677
Rops1g00702 468 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Rops1g00702 468 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Rops1g00702 468 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00702 Rops-Chr1 17832562 17838361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00702 1 466 SBP-box Gene Family AT1G69170 34.433 9.63e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops1g00702 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00702 - - gmx:100820149 754.207