Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00679 ATGCAACTCTCTCACACATCCTCTCTCTCTCATTTCATCACTTTAAGCACCAAAGGAGCAACCTCTACTCATTATGCTGCTACTGTAATCCAAACTTCTTTCCGAGAGTATCTGGCAAGAAGAGCACTTCGTGCACTTAAAGGATTGGTGGAGTTGCAAGCTTTAGTGAGGGGTCACAATGTTAGGAAGCAAGCAAAGATGACCCTTCGGTGCATGCAAGCTTTGGTTAGAGTACAAACAAGGGTCCTTGACCAACGCATAAGGTCTTCACATGATGGAAGTAGAAAATCCACCTTCGAAGACTCCGAGAAGGGGAGTGAATATGGTCACGTTAGCAAGGTCTCTTGA 348 0.4511 MQLSHTSSLSHFITLSTKGATSTHYAATVIQTSFREYLARRALRALKGLVELQALVRGHNVRKQAKMTLRCMQALVRVQTRVLDQRIRSSHDGSRKSTFEDSEKGSEYGHVSKVS* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00679 115 MobiDBLite consensus disorder prediction 86 115 - -
Rops1g00679 115 ProSiteProfiles IQ motif profile. 23 51 IPR000048 GO:0005515
Rops1g00679 115 Gene3D - 21 76 - -
Rops1g00679 115 PANTHER IQ-DOMAIN 5-RELATED 23 98 - -
Rops1g00679 115 ProSiteProfiles IQ motif profile. 47 74 IPR000048 GO:0005515
Rops1g00679 115 Pfam IQ calmodulin-binding motif 26 44 IPR000048 GO:0005515
Rops1g00679 115 Pfam IQ calmodulin-binding motif 52 66 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00679 Rops-Chr1 17183856 17184203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00679 24 102 IQD Protein Family AT1G01110 88.608 1.78e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00679 - - tcc:18613901 129.413