Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00678 ATGCACTCTCACGTTGAACTCCCATGCAAGCTGGTTCCAGCTACAAGGAAGAGGGATAAGGCTCTTGTAGAAGCTTCAAGGCTGATGCACTCAATGGCCGAGTTGGAGAAGAAGCTCAACAAGCTTGAGTTGCATTGCCACAGTTTGAAATCTGGGCTTGAAGAATGTAGCAACAGTACTTCCCCCTATACAACGGGTAAGGTTCAGAATTTCCATCAAGACACAGTGATCCAATATTTCTTGGTCTCAGTCTCTGAAGCAAGGTCATGTGTTCGGCTTCTGAGTCGTTCTCTTACTATGCAACTAAGGCACATGGGGAATAAAGTGTATAAGAAAGTTTCCTTCTTTCTCCAACCTTATGATATAAGGTTCTCCTTCTCGAAGAACGCCAGCCACGCCTACTGCTTCCCCATGAGCCTTGACCAATCTCCATCACGTAATGCAACAACCCCGACCCTCGACCTAGGCCATGGGGCTTCACTCCCCCAAGACTTTCTGCTTGCCACCGATGGCACGCCTCTTATGCATGGAATCACGCCCATTTACCAAGCGGCACGAGCGATTCTCAAGGACCCAGAGGATAGAACAGAGGTGCATGTGGTGCGTGCTAACCGAGCAAAAAGTGGTATATGGTTGAGGGAAGGGCTTGGTGCATGGGCGAAAGAGCATAAAGATAGGTTCAAGGTGTGGTACGTGGTGGAAAACAGGAAGAAAGGTTGGGAATACAGTGTGGGGTTTCATCATGGAGAGCTCGAAGGATTTCTCAAAGATCACGGCTTGGTTGGGACATCCATTTGTGACTCAATGGAGTCATGGGTTTCGGTTGAGGCATTGCGATAA 840 0.4845 MHSHVELPCKLVPATRKRDKALVEASRLMHSMAELEKKLNKLELHCHSLKSGLEECSNSTSPYTTGKVQNFHQDTVIQYFLVSVSEARSCVRLLSRSLTMQLRHMGNKVYKKVSFFLQPYDIRFSFSKNASHAYCFPMSLDQSPSRNATTPTLDLGHGASLPQDFLLATDGTPLMHGITPIYQAARAILKDPEDRTEVHVVRANRAKSGIWLREGLGAWAKEHKDRFKVWYVVENRKKGWEYSVGFHHGELEGFLKDHGLVGTSICDSMESWVSVEALR* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00678 279 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 6 129 IPR042316 -
Rops1g00678 279 Pfam Oxidoreductase NAD-binding domain 177 251 IPR001433 GO:0016491
Rops1g00678 279 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 177 256 IPR039261 -
Rops1g00678 279 Coils Coil 18 52 - -
Rops1g00678 279 Gene3D - 176 265 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00678 Rops-Chr1 17178815 17180464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00678 177 251 NADPH P450 reductases AT5G17770 40.000 3.07e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00678 - - lja:Lj4g3v3113850.1 181.415