Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00660 ATGACATCGTTGAAAAAAAAAACCTACGATGCTTCCAACAAAACAGTGCAAAGCTTCGAGTGGGTGATTGAACGAGAGGTGCCCACAGCCACGTACTTTGTACGCGCCTACGCATTTGACTCCAACGAAGTGCAAGTGGGTCACGGCCAAATCACAGATACAAAGAAAACTACTAACTTGTTCAAGGGTCCTGTAATGTTGCAAGCTCGTGCAATGCAAGCTGCTCATAAGTCAGTTGGTGGAAAAGCTCCCATGAAGCAGCTCGCCACCAAGGCTGCATTGAGGGAGGCTTACAAGAACAAGAAGTACTTGCCACTTGATCTCCGTCTCAAGAAGATCAGGGCTATTCGTAGAAGGCTCACCAAGCACCAGGCGTCATTGAAGACTGAACGGGAGAAGAAGAAAGAGATATATTTCCAATGA 423 0.4681 MTSLKKKTYDASNKTVQSFEWVIEREVPTATYFVRAYAFDSNEVQVGHGQITDTKKTTNLFKGPVMLQARAMQAAHKSVGGKAPMKQLATKAALREAYKNKKYLPLDLRLKKIRAIRRRLTKHQASLKTEREKKKEIYFQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00660 140 Gene3D - 103 140 - -
Rops1g00660 140 PRINTS Histone H3 signature 70 84 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops1g00660 140 PRINTS Histone H3 signature 84 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Rops1g00660 140 Coils Coil 113 133 - -
Rops1g00660 140 Pfam High-affinity nitrate transporter accessory, Ig-like domain 6 62 IPR016605 GO:0010167|GO:0015706
Rops1g00660 140 FunFam 60S ribosomal protein L35 103 140 - -
Rops1g00660 140 PANTHER 60S RIBOSOMAL PROTEIN L35 89 139 IPR045059 GO:0000463|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00660 Rops-Chr1 16731237 16731747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00660 91 139 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 89.796 9.35e-24 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00660 - - gmx:100802333 92.0485