Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00656 ATGGCCTCAAAAACCGAAAGATCTACCATTCAGGTGGCTCTCGTAGTAGCTTTTCTCACAGCCAGTGTTGTATTATCTGATGACACTGTGCAAATTCCCGCTGACAAGTCCCAATTGAACTCATGGTTCAATAACAATGTGGGGCCCTTAGGTCCAAGAAGGAGTAGCCTGGACCCTGCACTTGTGGCTGCAGAGGAAGGTGCTAAGGTTGTGAAGGTCATGCAAGATGGAAGTGGGGAATTCAAGACCATCACTGAGGCCATTAACAGCATACCTAGTGGGAACACCAAACGTGTGATTGTGTTCATTGGTGGTGGAAATTATAATGAGAAAATCACAATTGAAAGGACAAAACATTTTGTCACCTTGTACGGTGCACCTGGGAAGATGCCAAACTTGACCTATGAAGGCACTGCAAAAAAGTTTGGCACTGTTGACAGCGCCACATTGATTGTTGAATCAGATTACTTTGTGGCTGCTAACATCATGATCTCGAATTCTTCACCAAAACCTGATGGGACTCATGGAGGTCCAGCAGCTGCATTGAGAATTTCTGGTGACAAAGCAGCATTTTATAATTGCAAGCTGTTGGGATTCCAAGACACAGTTTGTGATGATAGGAGTAGGCATTTTTTCAAAGATTGCTTTATTCAAGGCACAGTGGATTTTGTTTTTGGAAGTGGGAAGTCATTATATTTGAATAATGAATTGAGAGTGCTTGGCAACAACCAAATGACAGTGATAGCGGCACATGCAAGAAAAAGTACATCTGAGGATAATTTCTACTCATTTGTGCATTGCGACATTACTGGAACTGGAACTGGCACGTTGTTGGGCAGAGCATGGTTTTCTCACTCAAAAGTGATCTTTGCATACACCACTATGAGCAGTGTTATCAATCCAGTAGGGTGGAGTGACAACCTGCACCCTGAATTTGCTAGCACCGTGTTCTTTGGAGAGTTCCAGAACAAGGGACCTGGTGTAGATCCCAAAGGGCGTGCCAAGTTGACAAAGCAACTAAGTGATGCGGAGGTCAAACCTTTCATAACACTTGGAATGATCGAAGGCTCCAAATGGCTACTTCCTCCTCCAACTCCCAAAGTCTAA 1107 0.4399 MASKTERSTIQVALVVAFLTASVVLSDDTVQIPADKSQLNSWFNNNVGPLGPRRSSLDPALVAAEEGAKVVKVMQDGSGEFKTITEAINSIPSGNTKRVIVFIGGGNYNEKITIERTKHFVTLYGAPGKMPNLTYEGTAKKFGTVDSATLIVESDYFVAANIMISNSSPKPDGTHGGPAAALRISGDKAAFYNCKLLGFQDTVCDDRSRHFFKDCFIQGTVDFVFGSGKSLYLNNELRVLGNNQMTVIAAHARKSTSEDNFYSFVHCDITGTGTGTLLGRAWFSHSKVIFAYTTMSSVINPVGWSDNLHPEFASTVFFGEFQNKGPGVDPKGRAKLTKQLSDAEVKPFITLGMIEGSKWLLPPPTPKV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00656 368 Gene3D - 69 364 IPR012334 -
Rops1g00656 368 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Rops1g00656 368 FunFam Pectinesterase 66 362 - -
Rops1g00656 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 63 360 - -
Rops1g00656 368 Pfam Pectinesterase 71 355 IPR000070 GO:0030599|GO:0042545
Rops1g00656 368 SUPERFAMILY Pectin lyase-like 68 362 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00656 Rops-Chr1 16571949 16573846 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00656 9 364 Carbohydrate Esterase AT1G69940 55.182 2.56e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00656 K01051 - gmx:100786427 561.607