Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00654 ATGGCCTCAAAAACCGAAAGCTCTACCATTAAGGTGGCTCTCGTAGCAGCTTTTCTCACAGCCAGTGTTGTATTATCTGATGACACTGTACAAATTCCCGCTGACAAGTCCCAATTGAACTCATGGTTCAATAACAACGTGGGGCCCTTAGGTCCAAGAAGGAGTAGCCTGGACCCTGCACTTGTGGCTGCAGAGGAAGGTGCTAAGGTTGTGAAGGTCATGCAAGATGGAAGTGGGGAATTCAAGACCATCACTGAGGCCATTAACAGCATACCTAGTGGGAACACCAAACGTGTGATTGTGTTCATTGGTGGTGGAAATTATAATGAGAAAATCACAATTGAAAGGACAAAACCTTTTGTCACCTTGTACGGCGCACCTGGGAAGATGCCAAACTTGACCTATGAAGGCACTGCAAAAAAATTTGGCACTGTTGACAGCGCCACATTGATTGTTGAATCAGATTACTTTGTGGCTGCTAACATCATGATCTCGAATTCTTCACCAAAACCTGATGGGACTCATGGAGGTCCAGCAGCTGCATTGAGAATTTCTGGTGACAAAGCAGCATTTTATAATTGCAAGTTGTTGGGATTCCAAGACACAGTTTGTGATGATAGGAGTAGGCATTTTTTCAAAGATTGCTTTATTCAAGGCACAGTGGATTTTGTTTTTGGAAGTGGGAAGTCATTATATTTGAATAATGAATTGAGAGTGCTTGGCAACAACCAAATGACAGTGATAGCGGCACATGCAAGAAAAAGTACATCTGAGGATAATTTCTACTCATTTGTGCATTGCGACATTACTGGAACTGGAACTGGCACGTTGTTGGGCAGAGCATGGTTTTCTCACTCAAAAGTGATCTTTACATACACCACTATGAGCAGTGTTATCAATCCAGTAGGGTGGAGTGACAACCTGCACCCTGAATTTGCTAGCACCGTGTTCTTTGGAGAGTTCCAGAACAAGGGACCTGGTGCAGATCCCAAAGGGCGTGCCAAGTTGACAAAGCAACTAAGTGATGCGGAGATCCTTAAGGTCGCTCTCATAGTAGCTTTTCTCACTGCCAATGTTGTTTTATCGGATGACAATGTGCCAATTCTTGCTGACAAATCCCAATTGAACTCTTGGTTCAATAGAAATGTGGGGCCCTTGGGCCAGAGAATAAGCAGCCTGGACCCTGCACCCGTGGCTGCAGAAAAAGGAGCTAAGGTTGTGAAGGTCATGCAAGATGGGAAGATGCCAAAATTGACCTATGGGGGCACTGCAAAAAATTTTGGCACTGTTGACAGCGCCACATTGATAGTTGAATCAGATTACTTTGTCGCTGCTAATATCATAATCTCGAATTCTTCTCCAAAACCTGATGGGGTTCATGGAGGTCCAGCAGCTGCATTAAGAATTTCTGGTGACAAAGCAGCATTTTATAATTGTAGGCTGTTGGGATTCCAAGACACAGTTTGTGATGATAGGAATAGGCATTTTTTCAAAGATTGCTTTATTCAAGGCACAGTGGATTTCATTTTTGGAAGTGGGAAGTCATTATATTTGAATAATGAATTGAGGGTGCTTGGTAACAATCAGATGACAGTGATAGCAGTAAATGCAAGAAAAAGTGCATCCGAGGATAATTTCTACTCATTTGTGCATTGTAGCGTTACTGGAACCGGAACTGGCACTTTGTTGGGCAGAGCATGGTTTTCTCATTCCAAAGTGATCTTTTCATACACCACTATGCACAGTGTTATCAATCCAATTGGGTGGAGTCACAACCAGCACCCTCAATATGCTAGCACTGCATTCTTTGGAGAGTTCCAGAACAAGGGACCTGGTGCAAATCCCAAGGGGCGTGCCACGTTCACAAAGCAACTAAGTCCTACGCAGGTCAAACCTTTCATAACGCTTGGAATGATTGAAGGCTCCAAATGGCTACTTCCTCCTCCAACTCTCAAAGTCTAA 1962 0.4368 MASKTESSTIKVALVAAFLTASVVLSDDTVQIPADKSQLNSWFNNNVGPLGPRRSSLDPALVAAEEGAKVVKVMQDGSGEFKTITEAINSIPSGNTKRVIVFIGGGNYNEKITIERTKPFVTLYGAPGKMPNLTYEGTAKKFGTVDSATLIVESDYFVAANIMISNSSPKPDGTHGGPAAALRISGDKAAFYNCKLLGFQDTVCDDRSRHFFKDCFIQGTVDFVFGSGKSLYLNNELRVLGNNQMTVIAAHARKSTSEDNFYSFVHCDITGTGTGTLLGRAWFSHSKVIFTYTTMSSVINPVGWSDNLHPEFASTVFFGEFQNKGPGADPKGRAKLTKQLSDAEILKVALIVAFLTANVVLSDDNVPILADKSQLNSWFNRNVGPLGQRISSLDPAPVAAEKGAKVVKVMQDGKMPKLTYGGTAKNFGTVDSATLIVESDYFVAANIIISNSSPKPDGVHGGPAAALRISGDKAAFYNCRLLGFQDTVCDDRNRHFFKDCFIQGTVDFIFGSGKSLYLNNELRVLGNNQMTVIAVNARKSASEDNFYSFVHCSVTGTGTGTLLGRAWFSHSKVIFSYTTMHSVINPIGWSHNQHPQYASTAFFGEFQNKGPGANPKGRATFTKQLSPTQVKPFITLGMIEGSKWLLPPPTLKV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00654 653 ProSitePatterns Pectinesterase signature 2. 502 511 IPR033131 -
Rops1g00654 653 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 64 347 - -
Rops1g00654 653 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Rops1g00654 653 SUPERFAMILY Pectin lyase-like 68 347 IPR011050 -
Rops1g00654 653 Gene3D - 398 648 IPR012334 -
Rops1g00654 653 Gene3D - 69 370 IPR012334 -
Rops1g00654 653 FunFam Pectinesterase 66 362 - -
Rops1g00654 653 FunFam Pectinesterase 398 647 - -
Rops1g00654 653 Pfam Pectinesterase 71 336 IPR000070 GO:0030599|GO:0042545
Rops1g00654 653 Pfam Pectinesterase 403 640 IPR000070 GO:0030599|GO:0042545
Rops1g00654 653 SUPERFAMILY Pectin lyase-like 424 646 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00654 Rops-Chr1 16528556 16534237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00654 348 651 Carbohydrate Esterase AT1G69940 45.634 1.70e-104 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00654 K01051 - gmx:100786427 516.924