Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00650 ATGGGAAGGTCCCCATGCTGTGATGAAAGTGGTTTGAAGAAAGGACCTTGGACACCCGAAGAAGATCAGAAGCTAGTAAACTACATTGAGAAACATGGACACGCCAGTTGGAGGGCTCTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGCTGCAGGTTAAGGTGGACCAATTACTTGAGGCCAGATATTAAAAGAGGGAAGTTTTCCCAAGAAGAAGAACAAACAATTCTGAATCTCCATGCCATCCTTGGAAACAAGTGGTCAACAATTGCAGGCCACTTACAGGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACTCATCTAAAGAAGAAGCTGATTAAAATGGGTTATGATCCGATGACACACCAGCCTAGAACTGATATCTTCTCAGGTTTGTCTCATCTCATAGCCCTGGCTAATTTGAAAGAACTCTTGGATCATAACCAGCCATGGGAACAAAATGCTATGAAACTACAAGCAGAGACCATCCAACTAGCCAGGCTGCAATGCTTACAACAACACCTCTTGCAGCCACAAGCTTCAATTGAGGCTGAGCCTAACACAAATAGTTTAAACAGCACCTTCATGAACAAGGACACCATTAATCTTTCAAATGATCAGTACTTTGAAAGCACCATCTCATCATCTATTGGAATTGGAAGTCTTGTCAATGATTCCATCCCTTTCTCTCAAATGCCTGACTTGGAAACACCACCATTAAGTAAGGACATGGTACAAGCTCCTCATGAAGCCATGGAGTTCTGTCAAGGAGAAAGTTATTCCAATTCTCCATGGCTTCTTTCATGCTCATACACTACCCCATCTCCTTCCCATGTGGTTCCACCCGTGATGGAGATTTCATTGACTAATAATATGGTTGATGATTGCATTGCTTCTACTATTTGCCCTGAGCTCCTTCTAGAGGACCCCTTGTTCAATGTGATTTCCTAG 963 0.4268 MGRSPCCDESGLKKGPWTPEEDQKLVNYIEKHGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHAILGNKWSTIAGHLQGRTDNEIKNFWNTHLKKKLIKMGYDPMTHQPRTDIFSGLSHLIALANLKELLDHNQPWEQNAMKLQAETIQLARLQCLQQHLLQPQASIEAEPNTNSLNSTFMNKDTINLSNDQYFESTISSSIGIGSLVNDSIPFSQMPDLETPPLSKDMVQAPHEAMEFCQGESYSNSPWLLSCSYTTPSPSHVVPPVMEISLTNNMVDDCIASTICPELLLEDPLFNVIS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00650 320 CDD SANT 69 112 IPR001005 -
Rops1g00650 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops1g00650 320 Gene3D - 11 67 - -
Rops1g00650 320 CDD SANT 16 61 IPR001005 -
Rops1g00650 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops1g00650 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops1g00650 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
Rops1g00650 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops1g00650 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops1g00650 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops1g00650 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops1g00650 320 Gene3D - 69 116 - -
Rops1g00650 320 SMART sant 66 114 IPR001005 -
Rops1g00650 320 SMART sant 13 63 IPR001005 -
Rops1g00650 320 FunFam MYB transcription factor 68 129 - -
Rops1g00650 320 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00650 Rops-Chr1 16412852 16414578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00650 1 319 MYB Transcription Factor Family AT5G10280 51.297 8.89e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g00650 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00650 K09422 - gmx:100785374 432.565