Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00635 ATGAGTGACAAAGAAAAGTTTGAGCTAGATAGAAACGAGGATCCTATGAATTATTCTACTGGAATGCCCTCAGATTGGAGATATGGGGGTGCTAATCTTGCAAATTCAAATGCTGGTTTGGTTGCCATGGGGAATTCTATGAATGTCAACAGAGGGGATCTAATTGGTTCTTCTTCATGTTCCTCTGCCTCTATGGTGGACTCATTTAGTCCAAACTTTTGGGACCATCACACCAATTCCCAAAACTTGGGGTTTTGTGACAATAATGTCCACAACAATGGGAGCTCTTCAAACACAACTGGAATAAGAAAAGATGGCTTTGGCTTTGGAAGAGCTGGTCAGGATCATGGAACACTTGAAATGGGTTGGAACCCTACTAATTCTATGTTGAAAGGGGATAGTTTTTTACCAAATGGGCCAGGGATCTTTCCCCAGAGTTTATCTCAGTTTCCAACTGATTCTGGATTTATTGAGAGGGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTAATATGGTGAACTCATATGAGATTCCTCAATCCATAGGTCTGTATGCGGGAACAATGCATGGAACAAGAGATGCTTTTGCAGGCCATGGGTTAAAATCAGCAAGTGGGGGAGGACAATCTCAAGAAAGTGATTTGAATGTAGTTGAAGCTACAAAAGCTGTGTCTCCATCTATTGAGCATCTGTCTACTAAAGGAAGCCCTCTGAAGAATGATAAAAGAAGTGAAAGTCATGTTATATCTCAAGATAAAGAGAAGCAATCTCTTGTTAGGCCTGCTAATGATTCTGACAGAGCTGAATCTAGTGATGATGGTGGTGGCGGCGGTGGCCAGGATGATTCCCCAATGTTGGAGGGTACTAGTGGGGAACCTTCTATTAAAGGACTAAGCTCAAAGAAAAGGAAAAGAAGTGGGCAGGAAACTGATAATGATAAAGCCAATGGAGCTCCAGAACTACACAGTGAAGATGCAAAGGACAACTCTGAGAGTCAACAGAAGGTAGACCAACAACCAACTTCAACAACCAAGGCTTCTGGAAAGAATGCCAAACAAGGGTCTCAAGCTTCTGATCCAGCGAAGGAGGAATACATTCATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGTCTTGCAGAGAGGGTGAGGAGGGAAAAAATAAGTGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCAGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCCATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCTGCACTCGGGTTTCCTCTAGAAATGTCTATGGCTTTTCCTCTGTTACATCCATCTCAACCAGGGTTGATTCAGTCAATCATTCCTAGCATGGCAAACTCATCTGATATCCTTCGAAGAACCGTTCATCCGCAGTTAGCAGCACCCTTGAGTGGAGGTTTCAAGGAGCCAAATCAGCTGCCTGAAGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACAACTGCTGCCATGAGTAGCCAAGATATGGATGGTACTGCGCCGGGAAGTCAGATGAAAGTTGAACTTTGA 1695 0.436 MSDKEKFELDRNEDPMNYSTGMPSDWRYGGANLANSNAGLVAMGNSMNVNRGDLIGSSSCSSASMVDSFSPNFWDHHTNSQNLGFCDNNVHNNGSSSNTTGIRKDGFGFGRAGQDHGTLEMGWNPTNSMLKGDSFLPNGPGIFPQSLSQFPTDSGFIERAARFSCFSGGNFGNMVNSYEIPQSIGLYAGTMHGTRDAFAGHGLKSASGGGQSQESDLNVVEATKAVSPSIEHLSTKGSPLKNDKRSESHVISQDKEKQSLVRPANDSDRAESSDDGGGGGGQDDSPMLEGTSGEPSIKGLSSKKRKRSGQETDNDKANGAPELHSEDAKDNSESQQKVDQQPTSTTKASGKNAKQGSQASDPAKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHQRPGPSSALGFPLEMSMAFPLLHPSQPGLIQSIIPSMANSSDILRRTVHPQLAAPLSGGFKEPNQLPEVWEDELHNVVQMSFATTAAMSSQDMDGTAPGSQMKVEL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00635 564 MobiDBLite consensus disorder prediction 299 334 - -
Rops1g00635 564 SMART finulus 382 432 IPR011598 GO:0046983
Rops1g00635 564 MobiDBLite consensus disorder prediction 225 364 - -
Rops1g00635 564 FunFam Basic helix-loop-helix transcription factor 373 445 - -
Rops1g00635 564 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 258 480 IPR024097 GO:0006355
Rops1g00635 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Rops1g00635 564 Gene3D - 373 446 IPR036638 GO:0046983
Rops1g00635 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Rops1g00635 564 MobiDBLite consensus disorder prediction 335 359 - -
Rops1g00635 564 MobiDBLite consensus disorder prediction 237 273 - -
Rops1g00635 564 CDD bHLH_AtBPE_like 366 451 - -
Rops1g00635 564 Pfam Helix-loop-helix DNA-binding domain 379 427 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00635 Rops-Chr1 16057537 16062431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00635 1 540 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.659 3.91e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00635 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00635 - - gmx:100797720 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00635 1 16057537 16062431 Rops1g00635 1 16057537 16062431 ECH