Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00629 ATGGTTCCAAGTGAGATCAGAGGAGTCCACTATCTAGCACCTGAGAACCCATTCCTAATTCCACCCAACTTTGGCTTCCAACAAAGTGAAATCCAAAACCTCCATCTCAATACCCTCTTAAGCAACTTGCCAAATTGTCACTTCCCTTCTGCAGGGCATGAATTTGCTCCTCCTTCAAGCCTCAGCAGCAACTCAACTTCTGATGAAGCAGATGAACAATTCAACATCATAGATGAAAGGAAACACAGGAGAATGATATCAAACAGAGAATCTGCCCGCAGATCAAGGATGAGGAAACAAAAGCACTTGGATGAACTCTGGTCACAGGTGGTAAGACTCAGAACTGAGAACCACAACCTTGTTGACAAACTGAACCATGCATCTGAGTCCCATGACAAAGTTCTTCAAGAGAATGCACGCCTCAAGGAAGAAGCTTCTGATCTTCGCCAAATGATAGCAGACTTGCAAATTGGAAACTCTTTTCCTTGCACCATAGCAGATTTTGATGAGATTCCATGCGACACATCTCAACTCAAAGTTGATTCCTCAAACCAATCAATCACTTCAGCAGATTTGATTCATGAATGA 588 0.4286 MVPSEIRGVHYLAPENPFLIPPNFGFQQSEIQNLHLNTLLSNLPNCHFPSAGHEFAPPSSLSSNSTSDEADEQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLVDKLNHASESHDKVLQENARLKEEASDLRQMIADLQIGNSFPCTIADFDEIPCDTSQLKVDSSNQSITSADLIHE* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00629 195 Coils Coil 124 158 - -
Rops1g00629 195 FunFam BZIP transcription factor 78 129 - -
Rops1g00629 195 Pfam bZIP transcription factor 80 138 IPR004827 GO:0003700|GO:0006355
Rops1g00629 195 SMART brlzneu 76 140 IPR004827 GO:0003700|GO:0006355
Rops1g00629 195 Gene3D - 78 133 - -
Rops1g00629 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 141 IPR004827 GO:0003700|GO:0006355
Rops1g00629 195 SUPERFAMILY Leucine zipper domain 80 129 IPR046347 GO:0003700|GO:0006355
Rops1g00629 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Rops1g00629 195 CDD bZIP_plant_GBF1 81 132 IPR045314 GO:0003700|GO:0006355
Rops1g00629 195 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 8 163 IPR044521 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00629 Rops-Chr1 15765283 15766064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00629 41 163 bZIP Transcription Factor Family AT3G30530 62.857 6.02e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops1g00629 bZIP_1 1.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00629 - - gmx:778126 324.709