Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00619 ATGGCAGAAGATATATCTGGTTCTGATTCTCATCATAGACGTCATGGTCTTTTAAAAGATCAAGTTCATTTGGTTAAGAGGAAAGACTCTGAGCGCTATGAGATTGCTTCAATCCAAGACCAACTATCATTTGAGAAGGGCTTTTTTATAGTGATTCGTGCATGCCAATTGTTAGCCCAAAAGAATGATGGGATAGTATTGGTAGGAGTGGCGGGTCCTTCAGGAGCAGGGAAGACTGTATTTACCGAAAAGATATTCAACTTCATGCCCAGCGTTGCTGTAATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGAAACTTTGATGATCCACGCTTAACAGACTATGACACATTGCTCCAGAATCTACATGATTTAAAGGAAGGAAAGCCAGCTAAGGTTCCAATATATGATTTCAAGTCCAGTTCACGTACAGGATTTAGGACAGTAGAAGCCCCAAGTTCCCGTATTGTGATTATAGAGGGCATCTATGCCTTAAGTGAGAGGTTGCGACCTCTACTGGACCTTCGAGTTTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAGCGAGTTATTCGTGACATCCAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTATATTGAGCCAGATCTCCAGACGGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGCCCTACTTACATATTAAAGTCAGCGAAGAATGTGACAGCGGATCAAATTAAAGCTGTTTTGTCTGAAGATTCTATGGAAACAACTGAGCAAACCTATGACATATATCTTCTACCACCTGGTGAAGATCCAGAAACTTGCCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTCATATCACCAAGAATCACTTTTGAAGTCAGTGTGCGCCTTCTTGGTGGACTAATGGCCTTGGGGTACACAATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGGAGAGATCGCTTGGTTCTAAAACACATAGGACAGCAGCTGGGTCTCGAAGGTTCCTACATTCCTCGTACCTATATTGAGCAAATTCAGATTGAAAAGCTTGTGAATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTGGATGAGGATTTGGTGTCAAGCCCTAAAGAAGCACTCTCTAGAGCCTCTGCTGACAGGGTTGCCATGAGAAATAAGCATTTGAGGAGTGGAATGTCACAGTCATATACACATCAAAGGGACAGAGATCTAGCCAAAGCTACTGGATATGTTGCCAACAGCCGAGGATTTGGTGAAAGAAATTCAGATTCCTCCACAGCTCAACTAAATCAGGGAGCCATTAATCAGCTTTCGGATCAGATTTCTGCCCTCAATGATAGAATGGATGAATTTACAAATCGTATTGAAGAACTGAACTCCAAGTTAACCGTCAAGAAAAATTCTCCAAGCCAACAAAATATGTCAGCTCTAGCAGAGGCCTGCAATGGTTCTGCTCCCACTTCTTACTTCATCACTAATTTGGGCAATGGTTCCCTTACTGCATCTAAGATGCCAAATTCATCGTCATCATCACAATTAGCTAAAGATTCTCCTCTAATGGATGAGATATCGGGCATCACACGTAGTCAGCGTCAGGTCATGCATCAATTGGAAAATCTCAGTAATCTTCTCAGGGGGAGTTTGGGGGAGAAGTCTCACCAAACAAGAACCAGCAGCAGGAAAAGCATAGCTACAGATTCAAATTCCACTGGAGCAACTGTCATGGTGGTGGTGGCAGTTGGTTGTTTGGGGATCTTCTTGATGAAAGGTTTGATGACAAGAACCTGA 1995 0.4175 MAEDISGSDSHHRRHGLLKDQVHLVKRKDSERYEIASIQDQLSFEKGFFIVIRACQLLAQKNDGIVLVGVAGPSGAGKTVFTEKIFNFMPSVAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPAKVPIYDFKSSSRTGFRTVEAPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKIINKFNPFTGFQSPTYILKSAKNVTADQIKAVLSEDSMETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLKHIGQQLGLEGSYIPRTYIEQIQIEKLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGMSQSYTHQRDRDLAKATGYVANSRGFGERNSDSSTAQLNQGAINQLSDQISALNDRMDEFTNRIEELNSKLTVKKNSPSQQNMSALAEACNGSAPTSYFITNLGNGSLTASKMPNSSSSSQLAKDSPLMDEISGITRSQRQVMHQLENLSNLLRGSLGEKSHQTRTSSRKSIATDSNSTGATVMVVVAVGCLGIFLMKGLMTRT* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00619 664 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Rops1g00619 664 Gene3D - 255 412 - -
Rops1g00619 664 Pfam CYTH domain 251 404 IPR023577 -
Rops1g00619 664 MobiDBLite consensus disorder prediction 613 635 - -
Rops1g00619 664 PRINTS Uridine kinase signature 188 198 - -
Rops1g00619 664 PRINTS Uridine kinase signature 65 82 - -
Rops1g00619 664 PRINTS Uridine kinase signature 224 237 - -
Rops1g00619 664 PRINTS Uridine kinase signature 132 147 - -
Rops1g00619 664 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Rops1g00619 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 236 IPR027417 -
Rops1g00619 664 Coils Coil 503 537 - -
Rops1g00619 664 CDD UMPK_like 67 239 - -
Rops1g00619 664 PANTHER URIDINE KINASE 15 423 - -
Rops1g00619 664 Gene3D - 66 248 IPR027417 -
Rops1g00619 664 SUPERFAMILY CYTH-like phosphatases 260 407 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00619 Rops-Chr1 15483572 15496303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00619 67 236 PRT Gene Family AT5G40870 29.282 1.25e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00619 K00876 - gmx:100797542 1157.51