Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00595 ATGAGGACGTATCTATGGTCTCTTACCTTTGGGCTTGAGGAAAGGAAAGTCAAAAGGTGTGGTTCAGAACAGTGGACGCATCATCGCTTGCTCACCCAAGAGCTTAGAGAACGTGTGAAATGGTATGGTCAATATAAGTGGATGGCAACACGAGTGAGTGGGTCAGGCCGTGGTCGGATTTTCATACGGAAAAAGAAAGGTGGTCAGGTTGTTCGTGTCATGGAAGTAGATGAGCATGTGGTGAGCTGCATTGAGTCTCGTCCTCATACGATGTTTCTTGCAAGTAGCGATATTGAGCATGCCATCAAGATATGGACTCCAAAGGCTCCCGAGAACTACTACTACCTCAGCTCAAAGAAGAAGGCACTTCAGGAGCTAAAGGACAAGCTCCATGCTTCTTTTGAAGGAGCTTCTTCTTCTGATGCCTCCATGTGGGGCGTTCCTCTCCTTGGTGGTGATGATAGGGCTGATGTGATACTCTTGAAGTTTCTGAGAGTAAGGGACGTCAGGGTTGGTGATGCTCACAACATGCTTCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGGTGCCGAGACCATCTTGGAAGAAGATTTAGGGTTCAAAGAGCTTGAAGGATTGATAGCTTATATGCCAGGGTATGATAAAGAGGGACACCCTGTTTTTTACAATGCTTATGGGGTGTTTAGGGACAAGGACATGTATGAGAGGATTTTTGGGGATGAAGAGAAGCTTAAGAAGTTCCTAAGGTGGAGGGTTCAAGTCCTTGAAAGAGGCATCAAGCTTCTACATTTCAAACCTGGTGGGGTCAATTCTCTCATTCAGGTCACAGACCTCAAGGACATGCCCAAGAGAGAGTTAAGGGTAGCTTCTAACCAGATCCTCTCACTGTTCCAAGATAACTACCTAGAAATGGTTGCTAGCAAGATTTTCATCAACGTGCCCTGGTACTTCAGCATGTTGTATTCAATGTTCAGTCCATTTTTGACTCAAAGAACCAAGCAACCATTTGGAAACCTTCAAGTTTGTTCCCTTTCGCTGGGTTGA 1044 0.4559 MRTYLWSLTFGLEERKVKRCGSEQWTHHRLLTQELRERVKWYGQYKWMATRVSGSGRGRIFIRKKKGGQVVRVMEVDEHVVSCIESRPHTMFLASSDIEHAIKIWTPKAPENYYYLSSKKKALQELKDKLHASFEGASSSDASMWGVPLLGGDDRADVILLKFLRVRDVRVGDAHNMLLKCLAWRKEFGAETILEEDLGFKELEGLIAYMPGYDKEGHPVFYNAYGVFRDKDMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYLEMVASKIFINVPWYFSMLYSMFSPFLTQRTKQPFGNLQVCSLSLG* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00595 347 SUPERFAMILY WD40 repeat-like 52 117 IPR036322 GO:0005515
Rops1g00595 347 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 195 347 IPR001251 -
Rops1g00595 347 Pfam CRAL/TRIO, N-terminal domain 122 179 IPR011074 -
Rops1g00595 347 CDD SEC14 205 334 IPR001251 -
Rops1g00595 347 Gene3D - 116 338 IPR036865 -
Rops1g00595 347 SMART sec14_4 202 340 IPR001251 -
Rops1g00595 347 PANTHER PATELLIN-1 117 336 IPR044834 GO:0008289
Rops1g00595 347 Pfam CRAL/TRIO domain 204 334 IPR001251 -
Rops1g00595 347 SUPERFAMILY CRAL/TRIO domain 201 334 IPR036865 -
Rops1g00595 347 SUPERFAMILY CRAL/TRIO N-terminal domain 120 197 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00595 Rops-Chr1 14840704 14842085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00595 1 51 Ion Channels AT5G57940 66.667 2.00e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00595 - - gmx:100809944 392.119