Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00594 ATGCTCATGAAGTACCTGACTCTACTTTGCTCTCATCTGAAATGGGTGTTAGATTTCCTTCTCTGCTATCCCTTTTACAAGCTCCATCATTCTCAGCTTCCAATAATTGGAGAAGAGCAGATTATATGCCATTATGAACCAACACCTGGCTCAGAGGAAGATGTAGATTGTGCTGTGTGTCTCTGCAAAATTGAAGAAGGAGAGGAAATTGGAGTGCTGAGATGTGAGCATGTCTTTCACAGAGATTGCTTGGATAGATGGGTTGGTTTCAAGATTTCCACTTGCCCTCTTTGCAGAGAATCAGTGGGTCCAAGAAGGGTTATCAGTGAGCTTGGAGCTGAAATTCTTATGTTTGCGTTTTGCTCTATCCGCACTGATAACCGTGATACATGGTGGCTTCGCTGA 405 0.4346 MLMKYLTLLCSHLKWVLDFLLCYPFYKLHHSQLPIIGEEQIICHYEPTPGSEEDVDCAVCLCKIEEGEEIGVLRCEHVFHRDCLDRWVGFKISTCPLCRESVGPRRVISELGAEILMFAFCSIRTDNRDTWWLR* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00594 134 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Rops1g00594 134 PANTHER - 5 110 - -
Rops1g00594 134 Pfam Ring finger domain 56 99 IPR001841 -
Rops1g00594 134 SUPERFAMILY RING/U-box 51 105 - -
Rops1g00594 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 106 IPR013083 -
Rops1g00594 134 SMART ring_2 57 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00594 Rops-Chr1 14825761 14826165 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00594 51 103 C3H Transcription Factor Family AT1G80400 45.283 3.23e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00594 K16282 - vvi:104878959 146.362