Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g00594 | ATGCTCATGAAGTACCTGACTCTACTTTGCTCTCATCTGAAATGGGTGTTAGATTTCCTTCTCTGCTATCCCTTTTACAAGCTCCATCATTCTCAGCTTCCAATAATTGGAGAAGAGCAGATTATATGCCATTATGAACCAACACCTGGCTCAGAGGAAGATGTAGATTGTGCTGTGTGTCTCTGCAAAATTGAAGAAGGAGAGGAAATTGGAGTGCTGAGATGTGAGCATGTCTTTCACAGAGATTGCTTGGATAGATGGGTTGGTTTCAAGATTTCCACTTGCCCTCTTTGCAGAGAATCAGTGGGTCCAAGAAGGGTTATCAGTGAGCTTGGAGCTGAAATTCTTATGTTTGCGTTTTGCTCTATCCGCACTGATAACCGTGATACATGGTGGCTTCGCTGA | 405 | 0.4346 | MLMKYLTLLCSHLKWVLDFLLCYPFYKLHHSQLPIIGEEQIICHYEPTPGSEEDVDCAVCLCKIEEGEEIGVLRCEHVFHRDCLDRWVGFKISTCPLCRESVGPRRVISELGAEILMFAFCSIRTDNRDTWWLR* | 135 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g00594 | 134 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 99 | IPR001841 | - | |
Rops1g00594 | 134 | PANTHER | - | 5 | 110 | - | - | |
Rops1g00594 | 134 | Pfam | Ring finger domain | 56 | 99 | IPR001841 | - | |
Rops1g00594 | 134 | SUPERFAMILY | RING/U-box | 51 | 105 | - | - | |
Rops1g00594 | 134 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 106 | IPR013083 | - | |
Rops1g00594 | 134 | SMART | ring_2 | 57 | 98 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g00594 | Rops-Chr1 | 14825761 | 14826165 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g00594 | 51 | 103 | C3H Transcription Factor Family | AT1G80400 | 45.283 | 3.23e-12 | 60.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g00594 | K16282 | - | vvi:104878959 | 146.362 |