Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00590 ATGAGCCCTCTAATCAGAATCGCATTAGCAATAAACTTCATTTCTAGTTCTCATACCTTCAAAATGCTCGTGAAGTACTCAAATCATCTAAAATGGATGTTCGATTTCCTTTTCCACTATCTTTGTTATCCCTTCTGCAAGCTCCATGGTTCTCAGACAATGATAATTGGAGAAGATCAGATTAGTTTATGCCATTATGTGTCCACCCAAGAAGATGTAGATTGTGCTGTGTGTCTCTGGAAAATGAGAGAAAGAGAAGAGATTAGAGTTTTGCGGTGTGGTCATGTTTTTCACAGAGATTGTTTGGATACTTGGGTTGGATTTGAGAATGCAACTTGTCCTCTTTGCAGAGATTCATTGGGTCCAAGAAGGGAAATCAGGGAGATTGGTGATGAAGTTCTACGATTTGATTTTTGTTCTTTTTATATGGATGATCATGAGATACAGTGGCTACTGTGA 459 0.3834 MSPLIRIALAINFISSSHTFKMLVKYSNHLKWMFDFLFHYLCYPFCKLHGSQTMIIGEDQISLCHYVSTQEDVDCAVCLWKMREREEIRVLRCGHVFHRDCLDTWVGFENATCPLCRDSLGPRREIREIGDEVLRFDFCSFYMDDHEIQWLL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00590 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 124 IPR013083 -
Rops1g00590 152 PANTHER - 66 125 IPR044249 -
Rops1g00590 152 SUPERFAMILY RING/U-box 67 127 - -
Rops1g00590 152 SMART ring_2 75 116 IPR001841 -
Rops1g00590 152 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Rops1g00590 152 Pfam Ring finger domain 74 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00590 Rops-Chr1 14777894 14778898 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00590 50 120 C3H Transcription Factor Family AT1G15100 44.156 1.64e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00590 K16282 - vvi:104878959 124.405