Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00586 ATGCTCATGAAGTACTTGATTCTAGTTTACACTCATCTGAAATGGGTGTTAGATTTCCTTCTATGCTATCCCTTCTACAAGCTCCATGATTCTCATCTGCCAATAATTGGAGAAGGGCAGAGCATAAGAACTTATGAACCAACCCCTGGCTTAGAGGAAGATATAGATTGTGCTGTGTGTCTGTGCAAAATTGAAGGAGGAGAGGAGATTAGAGTGCTGAGGTGTGATCATGTCTTTCACATGTATTGCTTGGATAGATGGGTTGGTTTCAAGAATAACACTTGCCCTCTTTGCAGAGAATCAGTGGGACCAAGAAGGGCCATCACTGAGCTTGGAGCTGAAATTTTACTGTTTGAGTGTTTTGCTCTTCACACTGATGACCGTGACACATGGTGGCTACGCTGA 405 0.4321 MLMKYLILVYTHLKWVLDFLLCYPFYKLHDSHLPIIGEGQSIRTYEPTPGLEEDIDCAVCLCKIEGGEEIRVLRCDHVFHMYCLDRWVGFKNNTCPLCRESVGPRRAITELGAEILLFECFALHTDDRDTWWLR* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00586 134 SMART ring_2 57 98 IPR001841 -
Rops1g00586 134 SUPERFAMILY RING/U-box 51 108 - -
Rops1g00586 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 106 IPR013083 -
Rops1g00586 134 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Rops1g00586 134 PANTHER - 28 109 - -
Rops1g00586 134 Pfam Ring finger domain 56 99 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00586 Rops-Chr1 14667271 14667792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00586 56 124 C3H Transcription Factor Family AT1G15100 43.662 3.00e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00586 K16282 - cave:132178403 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00586 1 14667271 14667792 Rops1g00586 1 14667271 14667792 ECH