Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00584 ATGCTCGTGAAGTACTTCACTCTAGTTTACACTCATCTTAAATGGGTGTTGGATTTCCTTCTATACTATCCCTTCTACAAGCTCCATGATTCTCATCTTCCAATAATAGGAGAAGAGCAGAATATATACAATTATCAACCAACCCCTGGCACAGAGGAAGATGTAGATTGTGCTGTGTGTCTGTGCAAAATAGATGGAGGAGATGAGATAAGAGTGCTGAGGTGTGACCATGTCTTTCACATGCATTGCTTGGATAGATGGGTTTGTTTCAAGAATACCACTTGCCCTCTATGCAGAGAATCAGTGGGACCAAGAAGGACCATCACTGAGCTTGGAGCTGAAATTTTACTGTTTGAGTTTTGTGCTCTCCACACTGATGACCGTGACACATGGTGGCTACGCTGA 405 0.4296 MLVKYFTLVYTHLKWVLDFLLYYPFYKLHDSHLPIIGEEQNIYNYQPTPGTEEDVDCAVCLCKIDGGDEIRVLRCDHVFHMHCLDRWVCFKNTTCPLCRESVGPRRTITELGAEILLFEFCALHTDDRDTWWLR* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00584 134 CDD RING-H2 57 99 - -
Rops1g00584 134 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Rops1g00584 134 SMART ring_2 57 98 IPR001841 -
Rops1g00584 134 Pfam Ring finger domain 56 99 IPR001841 -
Rops1g00584 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 106 IPR013083 -
Rops1g00584 134 PANTHER RING ZINC FINGER PROTEIN-RELATED 40 111 - -
Rops1g00584 134 SUPERFAMILY RING/U-box 51 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00584 Rops-Chr1 14598558 14599084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00584 25 102 C3H Transcription Factor Family AT2G18650 34.884 4.27e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00584 - K16282 vvi:104878972 141.354