Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00582 ATGGAGAAAGATCACAACTATTCGGCACCACCCATGCCCCCAAGTTTCAACACACTTGACTACTCACTTGATCATCACCACCACCACCATCACCATCATCATCAAAATTTATATCCACAAAATCAGCAGCAGCAGCAACTCATGAAGTTTCGAATCGGTGAAACTTCGGGTGAAAACAACACCGGGATGGTCATGGATTACATGACTCAAACACAACCACCACCACATACATCATTATCATCATTATCAAGCTTTTATGGTACCACTTCTTTTGATAAACTGAACTTTGCAGATGTGGTGCAGTTTGCAGATTTTGGACCCAAATTAGCCTTAAACCAAGCCAAGAACTGCGAAGAATCCGGGATCGATCCCGTGTATTTCCTCAAGTTTCCTGTCTTAAACGACAAGATGGAGGATCAAAATTTGATGGTGAACGATGGTGGTGGTGATGGAGAAGGAGAAAATGATGAGAGTTTCAACTTGGTAAGCTTGGAAGATAAATCAAGAATAGGGGTAACAGCAGAAGAAGAGGGAATAATCAGAGAAGATGAAGAAACTCGGGTTTCTGAAGACAACAACTCAGGGCAACAGCTTAGGTTTCTTGGTCATGAAGATCTCCAGAAGAATTCTACAGTGCAAGAAAACAAGAACAAGAGGAAGAGACCCAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGCCAACGCATGACTCACATCGCAGTTGAAAGGAACCGAAGAAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGACTACTTGGAGAAGCTCAATCAAGACAAGTTGGGGATTCAACTCTTACAACACAACAGCCTCTTCAGCCTCCATTTTTTCCACCTTTGTCTATGCCAAATGACCAGATGAAGCTTGTTGAGTTGGATACTGGACTTCAAGAAGAAACTGCAGAGAGCAAGTCTTGTTTGGCTGATGTAGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATTCTATCAAGGAGAAGGCCAGGACAGTTGATCAAAATCATTGCTGCCCTTGAAGATCTGCAACTAATTATCCTTCATACCAACATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAATGTGAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTTCAGCAGATACTCAGTTTTATACATGCAAACACTAGCATGTGA 1326 0.4223 MEKDHNYSAPPMPPSFNTLDYSLDHHHHHHHHHHQNLYPQNQQQQQLMKFRIGETSGENNTGMVMDYMTQTQPPPHTSLSSLSSFYGTTSFDKLNFADVVQFADFGPKLALNQAKNCEESGIDPVYFLKFPVLNDKMEDQNLMVNDGGGDGEGENDESFNLVSLEDKSRIGVTAEEEGIIREDEETRVSEDNNSGQQLRFLGHEDLQKNSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVGDSTLTTQQPLQPPFFPPLSMPNDQMKLVELDTGLQEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKIIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQILSFIHANTSM* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00582 441 MobiDBLite consensus disorder prediction 191 208 - -
Rops1g00582 441 MobiDBLite consensus disorder prediction 182 235 - -
Rops1g00582 441 MobiDBLite consensus disorder prediction 209 235 - -
Rops1g00582 441 PANTHER TRANSCRIPTION FACTOR FAMA 120 432 IPR044283 GO:0003700|GO:0010052
Rops1g00582 441 FunFam Basic helix-loop-helix transcription factor 224 299 - -
Rops1g00582 441 MobiDBLite consensus disorder prediction 1 44 - -
Rops1g00582 441 Pfam Helix-loop-helix DNA-binding domain 234 285 IPR011598 GO:0046983
Rops1g00582 441 CDD bHLH_AtFAMA_like 236 303 - -
Rops1g00582 441 CDD ACT_UUR-ACR-like 367 431 - -
Rops1g00582 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 300 IPR036638 GO:0046983
Rops1g00582 441 Gene3D - 224 299 IPR036638 GO:0046983
Rops1g00582 441 SMART finulus 239 290 IPR011598 GO:0046983
Rops1g00582 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 284 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00582 Rops-Chr1 14543886 14546832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00582 52 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.314 6.60e-148 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g00582 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00582 K26213 - gmx:100793349 580.867